Browse Element(s) Details


OsAffx.17462.1.S1_at

Description tigr:9636.m04235
TID=OsAffx.17462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4168010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g41680OsAffx.17462.1.S1_at10/118+26179517..26180997expressed protein
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17462.1.S1_at--1002--10611Chr08:26180619..26180639 (21 bp)
TTCGTCCTCTTCAAGGATCTCATGT
LOC_Os08g41680
OsAffx.17462.1.S1_at--34--7971NONE
GGATCTCATGTCACGACCAGAGTAC
NONE
OsAffx.17462.1.S1_at--147--1351Chr08:26179865..26179889 (25 bp)
AGAGTACAACTCGATCTTTGTCAAG
LOC_Os08g41680
OsAffx.17462.1.S1_at--529--431Chr08:26179852..26179876 (25 bp)
ATCTTTGTCAAGAAGCCTGATCTAG
LOC_Os08g41680
OsAffx.17462.1.S1_at--1119--8431Chr08:26179659..26179842 (25 bp)
GGCCAGGACTCATAATCATTTGCTT
LOC_Os08g41680
OsAffx.17462.1.S1_at--410--811Chr08:26179622..26179646 (25 bp)
ATGGTTTCTTGGTATGGGTCTTGAT
LOC_Os08g41680
OsAffx.17462.1.S1_at--454--811Chr08:26179609..26179633 (25 bp)
ATGGGTCTTGATTCTTCTTGTTTGC
LOC_Os08g41680
OsAffx.17462.1.S1_at--107--9591Chr08:26179594..26179618 (25 bp)
TCTTGTTTGCAAGCTTACCGCTGGA
LOC_Os08g41680
OsAffx.17462.1.S1_at--184--5171Chr08:26179586..26179610 (25 bp)
GCAAGCTTACCGCTGGAATTTTGTT
LOC_Os08g41680
OsAffx.17462.1.S1_at--8--2871Chr08:26179561..26179585 (25 bp)
AAGTGTCATGCTGAAGTTACTGCCA
LOC_Os08g41680
OsAffx.17462.1.S1_at--562--2831Chr08:26179548..26179572 (25 bp)
AAGTTACTGCCAACAGCCCTTGTTT
LOC_Os08g41680
Target Sequence 
TTCGTCCTCTTCAAGGATCTCATGTCACGACCAGAGTACAACTCGATCTTTGTCAAGAAGCCTGATCTAGATGGGAGATG
GCCAGGACTCATAATCATTTGCTTAATGCTATTGGCATGGTTTCTTGGTATGGGTCTTGATTCTTCTTGTTTGCAAGCTT
ACCGCTGGAATTTTGTTAAGTGTCATGCTGAAGTTACTGCCAACAGCCCTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis