Browse Element(s) Details


OsAffx.6106.1.S1_x_at

Description tigr:9636.m04226
TID=OsAffx.6106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to peptide transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4160011/11proton-dependent oligopeptide transport, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6106.1.S1_x_at--508--8711Chr08:26140206..26140230 (25 bp)
TGTCCGACTTCCGAGGGCGGCCGGT
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--796--9271Chr08:26140204..26140228 (25 bp)
TCCGACTTCCGAGGGCGGCCGGTCT
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--525--4791Chr08:26140159..26140179 (21 bp)
GCTCCGCACTGTTCGTCGCCATGTT
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--995--9291Chr08:26140040..26140177 (25 bp)
TCCGCACTGTTCGTCGCCATGTTGG
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--1145--4211Chr08:26140039..26140176 (25 bp)
CCGCACTGTTCGTCGCCATGTTGGA
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--948--4111Chr08:26140038..26140175 (25 bp)
CGCACTGTTCGTCGCCATGTTGGAG
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--839--3331Chr08:26140036..26140173 (25 bp)
CACTGTTCGTCGCCATGTTGGAGAT
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--993--3511Chr08:26140023..26140045 (23 bp)
CATGTTGGAGATGGGCTGCAGCTTC
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--392--731Chr08:26140022..26140045 (24 bp)
ATGTTGGAGATGGGCTGCAGCTTCT
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--844--1551Chr08:26140004..26140028 (25 bp)
AGCTTCTCCTACTACGGCGTGTCGG
LOC_Os08g41600
OsAffx.6106.1.S1_x_at--737--3692Chr01:38117164..38117638 (25 bp)
CTACTACGGCGTGTCGGCGAACCTG
NONE
Target Sequence 
TGTCCGACTTCCGAGGGCGGCCGGTCTACCGCGCCACCTCAGGCGGCTGGCGCTCCGCACTGTTCGTCGCCATGTTGGAG
ATGGGCTGCAGCTTCTCCTACTACGGCGTGTCGGCGAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6106.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis