Browse Element(s) Details


Os.50537.1.S1_at

Description gb:AK121686.1
DB_XREF= gi:37991309
TID=Os.50537.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070M04, full insert sequence.
FL= gb:AK121686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41510OsAffx.29621.1.S1_at11/118+26089944..26093295hypothetical protein
LOC_Os08g41510Os.10442.1.S2_at1/118+26089944..26093295hypothetical protein
LOC_Os08g41520NANA8+26098945..26099864Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g41530Os.49943.1.S1_at10/118+26100851..26105664Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41540Os.49943.1.S1_at1/118+26107480..26111135Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50537.1.S1_at--392--6191Chr08:26113108..26113132 (25 bp)
GAGGACAAATTCAGTTCCCGCTATC
LOC_Os08g41550
Os.50537.1.S1_at--1109--9291Chr08:26113093..26113117 (25 bp)
TCCCGCTATCGTTTAGTTGGTGTCA
LOC_Os08g41550
Os.50537.1.S1_at--279--8611Chr08:26113076..26113100 (25 bp)
TGGTGTCATTGAGAACCGTGGCCTC
LOC_Os08g41550
Os.50537.1.S1_at--526--4251Chr08:26113061..26113085 (25 bp)
CCGTGGCCTCAGCATTCATATTGGG
LOC_Os08g41550
Os.50537.1.S1_at--216--3191Chr08:26113010..26113034 (25 bp)
CAATCAGCAGCAGGGCAGTGGCTCT
LOC_Os08g41550
Os.50537.1.S1_at--1030--4811Chr08:26112990..26113014 (25 bp)
GCTCTTCCTCATGGTATTGTGCAAC
LOC_Os08g41550
Os.50537.1.S1_at--98--8011Chr08:26112787..26112811 (25 bp)
GGATGGACAGTGACCCAATCATTGT
LOC_Os08g41550
Os.50537.1.S1_at--754--6511Chr08:26112710..26112734 (25 bp)
GATATTTAGTCCTTGCAGGGCTTTG
LOC_Os08g41550
Os.50537.1.S1_at--244--8291Chr08:26112692..26112716 (25 bp)
GGCTTTGCCAACATGTACGTACCTA
LOC_Os08g41550
Os.50537.1.S1_at--1154--1611Chr08:26112655..26112679 (25 bp)
AGCTGGTGTTCTTGATCATTTGATC
LOC_Os08g41550
Os.50537.1.S1_at--421--7891Chr08:26112629..26112653 (25 bp)
GGTTACAGTCATTCACATTCTTTTT
LOC_Os08g41550
Target Sequence 
GAGGACAAATTCAGTTCCCGCTATCGTTTAGTTGGTGTCATTGAGAACCGTGGCCTCAGCATTCATATTGGGCAGTGCGT
TGCTTATGTGAGAGCAAACAATCAGCAGCAGGGCAGTGGCTCTTCCTCATGGTATTGTGCAACCGATGACGACATCAAAG
AAATCTCTTTAGAAGAAGTTCTCAAGTGCGAGGCTTACCTTCTTTTCTATGAGAGAATGGGCTGCTAAGACTGTAAGACA
TGTCTTGAATTCTATACACACCAAAGAATCCGAAGAGCAATCACAAATGAAGCAGATATTTGAGAGTATCAAGGTTTATT
TGGATGGACAGTGACCCAATCATTGTATATACTGACGTGGGTTCGTGATCAGGTCCAGTTTTGTCGTTGTGGCTGAATGA
TATTTAGTCCTTGCAGGGCTTTGCCAACATGTACGTACCTAGTTGGGGATATTAGCTGGTGTTCTTGATCATTTGATCTG
GTTACAGTCATTCACATTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis