Browse Element(s) Details


Os.49943.1.S1_at

Description gb:AK119411.1
DB_XREF= gi:37989034
TID=Os.49943.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F09, full insert sequence.
FL= gb:AK119411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4153010/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g415401/11Ubiquitin carboxyl-terminal hydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41500OsAffx.29620.1.S1_at10/118+26081563..26086104UBA/TS-N domain containing protein, expressed
LOC_Os08g41510OsAffx.29621.1.S1_at11/118+26089944..26093295hypothetical protein
LOC_Os08g41510Os.10442.1.S2_at1/118+26089944..26093295hypothetical protein
LOC_Os08g41520NANA8+26098945..26099864Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g41530Os.49943.1.S1_at10/118+26100851..26105664Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41540Os.49943.1.S1_at1/118+26107480..26111135Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49943.1.S1_at--314--2751Chr08:26101379..26101403 (25 bp)
AAGACAATTCCAGCTATCACCTAGT
LOC_Os08g41530
Os.49943.1.S1_at--771--7132Chr08:26107647..26107671 (25 bp)
GTCATTGAACACATTGGCCCCAGCA
LOC_Os08g41540
Os.49943.1.S1_at--513--6751Chr08:26101322..26101346 (25 bp)
GTTCAGGGCACATGGTTGCTTACGT
LOC_Os08g41530
Os.49943.1.S1_at--463--6951Chr08:26101096..26101120 (25 bp)
GTAGACGTCGTGATCAAGTCCAATT
LOC_Os08g41530
Os.49943.1.S1_at--959--8331Chr08:26101060..26101084 (25 bp)
GGCTGAGTCATTGTAGGACCTGCAA
LOC_Os08g41530
Os.49943.1.S1_at--805--10731Chr08:26101034..26101058 (25 bp)
TTGACTGTAATACGTTCCTGCCCAG
LOC_Os08g41530
Os.49943.1.S1_at--1119--6691Chr08:26101021..26101045 (25 bp)
GTTCCTGCCCAGCTGAATAGATGGT
LOC_Os08g41530
Os.49943.1.S1_at--1108--3391Chr08:26100980..26101004 (25 bp)
CAGCTAGTCTGATCACATTCGTAAT
LOC_Os08g41530
Os.49943.1.S1_at--316--7071NONE
GTAATCTCCTTTTTCTTCTCATGAG
NONE
Os.49943.1.S1_at--662--6171Chr08:26100937..26100961 (25 bp)
GAGGAACGTGTTCTTCTTCCCTGGA
LOC_Os08g41530
Os.49943.1.S1_at--1018--2171Chr08:26100897..26100921 (25 bp)
ACACAGGACTGTACTAATGCTTGGT
LOC_Os08g41530
Target Sequence 
AAGACAATTCCAGCTATCACCTAGTCGGTGTCATTGAACACATTGGCCCCAGCACCAGTTCAGGGCACATGGTTGCTTAC
GTGAGACCAAATCAAGAGCAGCCTGACGGTGGCACTTCCCCNTGGTATCGTGCAAGTGATACCGACATCAGACAAGTATC
TCTAGAAGAAGTTCTCAAGTGCGAGGCCTCTCTTTTCTTCTATGAGAGAATTGGAGGCTAACGTCGAAGGAAGTAAATTT
GTTAGATTAGCAAGCATTCTTTGGATGGACAAGGATCCNTTCAGTAGACGTCGTGATCAAGTCCAATTTTGTTTGCTTTG
GCTGAGTCATTGTAGGACCTGCAANTTGACTGTAATACGTTCCTGCCCAGCTGAATAGATGGTGGCCNGGTGTTCTTAAT
CAGCTAGTCTGATCACATTCGTAATCTCCTTTTTCTTCTCATGAGGAACGTGTTCTTCTTCCCTGGAAAAGAANGAAGAA
GAACACAGGACTGTACTAATGCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis