Browse Element(s) Details


Os.10442.1.S2_at

Description gb:AK106598.1
DB_XREF= gi:32991807
TID=Os.10442.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A12, full insert sequence.
FL= gb:AK106598.1 gb:AK059123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g329561/11hypothetical protein
LOC_Os08g415101/11hypothetical protein
LOC_Os11g316801/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32944OsAffx.2442.1.S1_x_at1/119+19643053..19647823SBP domain containing protein
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10442.1.S2_at--506--8672Chr06:5686838..5686862 (25 bp)
TGTCCTCTAATTCTGCGGTCCAATC
NONE
Os.10442.1.S2_at--786--7512Chr06:5686696..5686720 (25 bp)
GGGCCCTAAACGTGGACAAGCTAAT
NONE
Os.10442.1.S2_at--541--3992Chr06:5686686..5686710 (25 bp)
CGTGGACAAGCTAATACAATACTAT
NONE
Os.10442.1.S2_at--1147--3171Chr06:5683911..5683935 (25 bp)
CAATACTATAGTTTTTCATGAGAAA
NONE
Os.10442.1.S2_at--71--492Chr06:5686646..5686670 (25 bp)
ATCTGATATAGTACATCCATCCTGT
NONE
Os.10442.1.S2_at--199--7032Chr06:5686636..5686660 (25 bp)
GTACATCCATCCTGTTTTAAGTGCA
NONE
Os.10442.1.S2_at--746--572Chr06:5686632..5686656 (25 bp)
ATCCATCCTGTTTTAAGTGCAATTG
NONE
Os.10442.1.S2_at--1093--9252Chr06:5686627..5686651 (25 bp)
TCCTGTTTTAAGTGCAATTGTGAGT
NONE
Os.10442.1.S2_at--227--8673Chr04:32459378..32459397 (20 bp)
TGTGAGTTTCCGTGTTTAATGTTTG
NONE
Os.10442.1.S2_at--474--6073Chr08:26361257..26361277 (21 bp)
GAGTTTCCGTGTTTAATGTTTGATT
NONE
Os.10442.1.S2_at--578--87714Chr10:11374405..11374424 (20 bp)
TGTTTGATTGTCCGTCTTATTTCAA
NONE
Target Sequence 
TGTCCTCTAATTCTGCGGTCCAATCAAACGGCCATTCCTCTGTGTTTTTCTGTGTTTTGCAATCCTCTGTTTTACACTTG
CATTCTTATCAAAATCCTGCGTTTTTCCTATTCCTATGTTTTCTCATTACTACGATTTAAAGGGGCCCTAAACGTGGACA
AGCTAATACAATACTATAGTTTTTCATGAGAAATCTGATATAGTACATCCATCCTGTTTTAAGTGCAATTGTGAGTTTCC
GTGTTTAATGTTTGATTGTCCGTCTTATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10442.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis