Browse Element(s) Details


OsAffx.2442.1.S1_x_at

Description tigr:9629.m06890
TID=OsAffx.2442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=squamosa-promoter binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6983011/11SBP domain containing protein, expressed
LOC_Os06g490101/11SBP domain containing protein, expressed
LOC_Os06g453101/11SBP domain containing protein, expressed
LOC_Os09g314381/11SBP-domain protein 5, putative, expressed
LOC_Os02g247201/11Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os09g329441/11SBP domain containing protein
LOC_Os04g434801/11retrotransposon protein, putative, unclassified
LOC_Os11g303701/11expressed protein
LOC_Os08g398901/11SBP-domain protein 5, putative, expressed
LOC_Os04g465801/11SBP domain containing protein, expressed
LOC_Os08g419401/11teosinte glume architecture 1, putative, expressed
LOC_Os02g077801/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69810NANA1+40633840..40636919transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69820Os.14491.2.S1_x_at3/111+40639762..40643020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69820Os.47463.1.S1_x_at2/111+40639762..40643020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69830Os.11203.1.S1_at11/111+40658582..40662474SBP domain containing protein, expressed
LOC_Os01g69830OsAffx.2442.1.S1_x_at11/111+40658582..40662474SBP domain containing protein, expressed
LOC_Os01g69840OsAffx.23983.1.S1_at11/111+40663584..40664155expressed protein
LOC_Os01g69850Os.4175.1.S1_at11/111+40671223..40691433SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2442.1.S1_x_at--71--4071Chr01:40661465..40661489 (25 bp)
CGACGTGTTCCAAGAGCCGTACTAC
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--190--5151Chr01:40661551..40661575 (25 bp)
GCAACAAGGCGAGGAAGCACCACTT
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--614--371Chr01:40661649..40661673 (25 bp)
ATCACGCCTTCCTCGGAGAGCAGGA
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--420--5151Chr01:40661695..40661719 (25 bp)
GCAACGGCAAGATGTTCGCCCACGA
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--228--7711Chr01:40661723..40661747 (25 bp)
GGGTCTGGACAACTGTGCTCTCTCT
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--1048--73112Chr09:19647438..19647457 (20 bp)
GTGCTCTCTCTCTTCTGTCAGACAA
LOC_Os09g32944
OsAffx.2442.1.S1_x_at--811--8671Chr01:40661860..40661884 (25 bp)
TGTCCTACGTCAGAATGGCCGGCAA
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--1104--2911Chr01:40661883..40661907 (25 bp)
AAGGACACGTCCATCTTGGCAAAAT
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--106--10871Chr01:40661898..40661922 (25 bp)
TTGGCAAAATCTGCCACTACCACTG
LOC_Os01g69830
OsAffx.2442.1.S1_x_at--1117--7332Chr03:6055164..6055449 (25 bp)
GTGCACAGCTGCAATACCATGGCTA
NONE
OsAffx.2442.1.S1_x_at--826--752Chr01:40661989..40662013 (25 bp)
ATGTCAGCGCCGATCAGGGTAGCTC
LOC_Os01g69830
Target Sequence 
CGACGTGTTCCAAGAGCCGTACTACCACGCCCTCCACCTCAACGGCGCCGGCGCCGCCGCGGCCGCCTCCATCTTCCACC
ACGGCGGCAACAAGGCGAGGAAGCACCACTTCCCTTTCCTGACGGCCGACCACGGCGGCGGCGCCGCCGCGGCGTCGCCG
TTGTTCGGGTGCCAGCCGTTCACCATCACGCCTTCCTCGGAGAGCAGGAGCAGCAGCAGCAGCCGGCACAGCAACGGCAA
GATGTTCGCCCACGACGGGGGTCTGGACAACTGTGCTCTCTCTCTTCTGTCAGACAACCCCACACCCACGGCGCAGATCA
CCATCCCACAGCCTCTCTTCGCCGGCGGCGGGCAGTACGGCGGCGGCGGCGGCGGCGACGTGTCGCTCACCGGCCTGTCC
TACGTCAGAATGGCCGGCAAGGACACGTCCATCTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTACTACTCCTAC
TACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2442.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis