Browse Element(s) Details


Os.11203.1.S1_at

Description gb:AK062581.1
DB_XREF= gi:32972599
TID=Os.11203.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B10, full insert sequence.
FL= gb:AK062581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6983011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69810NANA1+40633840..40636919transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69820Os.14491.2.S1_x_at3/111+40639762..40643020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69820Os.47463.1.S1_x_at2/111+40639762..40643020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69830Os.11203.1.S1_at11/111+40658582..40662474SBP domain containing protein, expressed
LOC_Os01g69830OsAffx.2442.1.S1_x_at11/111+40658582..40662474SBP domain containing protein, expressed
LOC_Os01g69840OsAffx.23983.1.S1_at11/111+40663584..40664155expressed protein
LOC_Os01g69850Os.4175.1.S1_at11/111+40671223..40691433SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11203.1.S1_at--923--3751Chr01:40662041..40662065 (25 bp)
CTCATCGTGGTAGTGGAGATTCCGG
LOC_Os01g69830
Os.11203.1.S1_at--460--8551Chr01:40662054..40662078 (25 bp)
TGGAGATTCCGGGTTCCGATTTCGA
LOC_Os01g69830
Os.11203.1.S1_at--815--7671Chr01:40662064..40662088 (25 bp)
GGGTTCCGATTTCGATCTCAGCGAG
LOC_Os01g69830
Os.11203.1.S1_at--175--9591Chr01:40662096..40662120 (25 bp)
TCTTGAGCTGAATTCCTGATAGATC
LOC_Os01g69830
Os.11203.1.S1_at--847--10211Chr01:40662200..40662224 (25 bp)
TATTCACCACGATATGCACATTTTC
LOC_Os01g69830
Os.11203.1.S1_at--521--651Chr01:40662213..40662237 (25 bp)
ATGCACATTTTCCAACTTTGCCTGG
LOC_Os01g69830
Os.11203.1.S1_at--1118--10651Chr01:40662222..40662246 (25 bp)
TTCCAACTTTGCCTGGTATTTCCAG
LOC_Os01g69830
Os.11203.1.S1_at--1153--4371Chr01:40662263..40662287 (25 bp)
CCAAGCCAGCTTATGATTCACAATT
LOC_Os01g69830
Os.11203.1.S1_at--1003--8011Chr01:40662317..40662341 (25 bp)
GGAGGGTTATTGACTTGTACTGTAG
LOC_Os01g69830
Os.11203.1.S1_at--866--7471Chr01:40662358..40662382 (25 bp)
GTGTGTACATTTGGCTATCCACTTG
LOC_Os01g69830
Os.11203.1.S1_at--1141--5211Chr01:40662434..40662458 (25 bp)
GAATAGTCAAATTAGCCTCAAAAGC
LOC_Os01g69830
Target Sequence 
CTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCNTGTTCTTGAGCTGAATTCCTGATAGATC
AGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAAT
ATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATT
CACAATTGCATTATTAGAACTAGTGCTATTATTTTTGGAGGGTTATTGACTTGTACTGTAGTGGTACNGNTNTTGTNGTG
TGTACATTTGGCTATCCACTTGATTGGTGTNNGGGCTAGTTCAGCAGGAACTAGACATAAGTTAACTGTACTTGAATAGT
CAAATTAGCCTCAAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis