Browse Element(s) Details


OsAffx.23983.1.S1_at

Description tigr:9629.m06891
TID=OsAffx.23983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6984011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69820Os.14491.2.S1_x_at3/111+40639762..40643020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69820Os.47463.1.S1_x_at2/111+40639762..40643020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g69830Os.11203.1.S1_at11/111+40658582..40662474SBP domain containing protein, expressed
LOC_Os01g69830OsAffx.2442.1.S1_x_at11/111+40658582..40662474SBP domain containing protein, expressed
LOC_Os01g69840OsAffx.23983.1.S1_at11/111+40663584..40664155expressed protein
LOC_Os01g69850Os.4175.1.S1_at11/111+40671223..40691433SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23983.1.S1_at--828--311Chr01:40664014..40664038 (25 bp)
ATACTCCAAGTATGTCAAACCCCAG
LOC_Os01g69840
OsAffx.23983.1.S1_at--764--5071Chr01:40663988..40664012 (25 bp)
GCAGCCCTTCTGTAAGTGTCACACA
LOC_Os01g69840
OsAffx.23983.1.S1_at--976--8851Chr01:40663927..40663951 (25 bp)
TGATGTAGCTGCAGCTGCAAACGGC
LOC_Os01g69840
OsAffx.23983.1.S1_at--181--2371Chr01:40663909..40663933 (25 bp)
AAACGGCTCCTATGGTGGCGGCAAC
LOC_Os01g69840
OsAffx.23983.1.S1_at--245--1871Chr01:40663880..40663904 (25 bp)
ACGAGAGGGCGACGGCTTACATCTT
LOC_Os01g69840
OsAffx.23983.1.S1_at--139--9891Chr01:40663863..40663887 (25 bp)
TACATCTTGGCCGTCAGAGAGCGTT
LOC_Os01g69840
OsAffx.23983.1.S1_at--671--3891Chr01:40663764..40663788 (25 bp)
CTGGGTAGCCATGCCTATGCTTGCA
LOC_Os01g69840
OsAffx.23983.1.S1_at--636--7851Chr01:40663731..40663755 (25 bp)
GGTAGTAGCTCCTTACTATGTCATG
LOC_Os01g69840
OsAffx.23983.1.S1_at--970--10111Chr01:40663715..40663739 (25 bp)
TATGTCATGCTTTCCCATGTTCTTC
LOC_Os01g69840
OsAffx.23983.1.S1_at--784--2151Chr01:40663636..40663660 (25 bp)
ACAGCTTCTGTTTCTGAAACCTGGT
LOC_Os01g69840
OsAffx.23983.1.S1_at--407--5551Chr01:40663621..40663645 (25 bp)
GAAACCTGGTTGTCGTTTTGACTCT
LOC_Os01g69840
Target Sequence 
ATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTT
CCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTG
GCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCA
AGAATGTCTTCTGGGTAGCCATGCCTATGCTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTT
CTTCCTTCTCTTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATAACAGCTTCTGTTTCTGAAACCT
GGTTGTCGTTTTGACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis