Browse Element(s) Details


Os.37882.1.S1_at

Description gb:AK061725.1
DB_XREF= gi:32971743
TID=Os.37882.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B03, full insert sequence.
FL= gb:AK061725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3297611/1160S ribosomal protein L7a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein
LOC_Os09g32988Os.52095.2.S1_at9/119+19693025..19695333Pollen proteins Ole e I family protein, expressed
LOC_Os09g33450Os.17295.1.S1_at11/119+19701631..19706208DHHC zinc finger domain containing protein, expressed
LOC_Os09g33460Os.49632.1.S1_a_at11/119+19710358..19712402Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37882.1.S1_at--658--4351Chr09:19683998..19684022 (25 bp)
CCAGCTGGTTGTCATCGCTCATGAT
LOC_Os09g32976
Os.37882.1.S1_at--725--531Chr09:19683985..19684009 (25 bp)
ATCGCTCATGATGTTGATCCAATTG
LOC_Os09g32976
Os.37882.1.S1_at--312--7771Chr09:19683920..19683944 (25 bp)
GGTCCCTTACTGCATCGTTAAGGGC
LOC_Os09g32976
Os.37882.1.S1_at--153--6771Chr09:19683904..19683928 (25 bp)
GTTAAGGGCAAAGCTCGCCTTGGAT
LOC_Os09g32976
Os.37882.1.S1_at--899--2691Chr09:19683794..19683918 (25 bp)
AAGCTCGCCTTGGATCGATTGTTCA
LOC_Os09g32976
Os.37882.1.S1_at--58--2431Chr09:19683489..19683513 (25 bp)
AAAAGCTTCTCGCTAAGGAGGCCGC
LOC_Os09g32976
Os.37882.1.S1_at--392--10771Chr09:19683428..19683452 (25 bp)
TTGAGCTCGCCCTGTAGTTTCATTT
LOC_Os09g32976
Os.37882.1.S1_at--591--6191Chr09:19683383..19683407 (25 bp)
GAGGAACTCAGTTAGCACCATGCGA
LOC_Os09g32976
Os.37882.1.S1_at--541--1731Chr09:19683367..19683391 (25 bp)
ACCATGCGACAGTGCTGTGGTTTTC
LOC_Os09g32976
Os.37882.1.S1_at--907--3871Chr09:19683353..19683377 (25 bp)
CTGTGGTTTTCTGAAGTCTAGTTTC
LOC_Os09g32976
Os.37882.1.S1_at--629--6511Chr09:19683286..19683310 (25 bp)
GATATCAGAGCTTTACAATGTTTGG
LOC_Os09g32976
Target Sequence 
CCAGCTGGTTGTCATCGCTCATGATGTTGATCCAATTGAGCTGGTTGTGTGGCTTCCAGCCCTGTGNAGGAAGATGGAGG
TCCCTTACTGCATCGTTAAGGGCAAAGCTCGCCTTGGATCGATTGTTCACAAGAAGACTGCATCTGTTCTGTGCTTGACC
ACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAGATCTTGGAGGCCATCAAGGCGAACTTCAACGACAAGTTCGACGA
GGTCAGGAAGAAGTGGGGAGGCGGCGTCATGGGCTCCAAGTCGCAGGCGAAGACCAAGGCCAGGGAAAAGCTTCTCGCTA
AGGAGGCCGCCCAGCGGATGACCTAAATTATATTCGCCCCCCGCCGTTGAGCTCGCCCTGTAGTTTCATTTTTCAGTGTA
ATGATTTTGACGAGGAACTCAGTTAGCACCATGCGACAGTGCTGTGGTTTTCTGAAGTCTAGTTTCATATATTTTCTGTT
CACCGGACCATGTTGGGAAACTATGCAAGATATCAGAGCTTTACAATGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis