Browse Element(s) Details


Os.11559.1.S1_at

Description gb:AK071392.1
DB_XREF= gi:32981415
TID=Os.11559.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091L24, full insert sequence.
FL= gb:AK071392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3296411/11Peroxidase 35 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein
LOC_Os09g32988Os.52095.2.S1_at9/119+19693025..19695333Pollen proteins Ole e I family protein, expressed
LOC_Os09g33450Os.17295.1.S1_at11/119+19701631..19706208DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11559.1.S1_at--733--4431Chr09:19674732..19674756 (25 bp)
GCCATATTCGCCAAGAACAACCTCA
LOC_Os09g32964
Os.11559.1.S1_at--1061--4891Chr09:19674401..19674425 (25 bp)
GCTTCGCCAAGAACCAGACGCTCTT
LOC_Os09g32964
Os.11559.1.S1_at--1044--4371Chr09:19674395..19674419 (25 bp)
CCAAGAACCAGACGCTCTTCTTCGA
LOC_Os09g32964
Os.11559.1.S1_at--619--811Chr09:19674354..19674378 (25 bp)
ATGGTCAAGCTTGGCAGGGTCGGAG
LOC_Os09g32964
Os.11559.1.S1_at--81--3211Chr09:19674328..19674352 (25 bp)
CAAGTCCGGGAAGCATGGAGAGATC
LOC_Os09g32964
Os.11559.1.S1_at--816--6031Chr09:19674309..19674333 (25 bp)
GAGATCAGAAGAGACTGCACAGCTT
LOC_Os09g32964
Os.11559.1.S1_at--509--5991Chr09:19674299..19674323 (25 bp)
GAGACTGCACAGCTTTCAACTGAAC
LOC_Os09g32964
Os.11559.1.S1_at--783--5111Chr09:19674293..19674317 (25 bp)
GCACAGCTTTCAACTGAACATAGTT
LOC_Os09g32964
Os.11559.1.S1_at--602--5491Chr09:19674278..19674302 (25 bp)
GAACATAGTTGCATAGCTGCACTGC
LOC_Os09g32964
Os.11559.1.S1_at--1107--6651Chr09:19674271..19674295 (25 bp)
GTTGCATAGCTGCACTGCGACATTT
LOC_Os09g32964
Os.11559.1.S1_at--298--1611Chr09:19674264..19674288 (25 bp)
AGCTGCACTGCGACATTTGTAAGTT
LOC_Os09g32964
Target Sequence 
GCCATATTCGCCAAGAACAACCTCACCGTGCTCGACATGGTGGCGCTCTCCGGCGCGCACACCGTCGGCTTCGCGCACTG
CACGCGCTTCGCCGGCCGGCTGTACGGCCGCGTCGGCGNCGNCGTGGACCCGTCCTACGACCCGGCGTACGCGCGGCAGC
TGATGGCGGCGTGCCCGCGCGACGTCGCGCCGACCATCGCCGTCAACATGGACCCCATCACCCCGGCCGCCTTCGACAAC
GCCTACTACGCCAACCTCGCCGGCGGCCTCGGCCTGTTCACCTCCGACCAGGAGCTCTACACCGANCNNCGCGTCGCGGC
CGGCGGTGACCNGCTTCGCCAAGAACCAGACGCTCTTCTTCGAGGCGTTCAAGGAGGCCATGGTCAAGCTTGGCAGGGTC
GGAGTCAAGTCCGGGAAGCATGGAGAGATCAGAAGAGACTGCACAGCTTTCAACTGAACATAGTTGCATAGCTGCACTGC
GACATTTGTAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis