Browse Element(s) Details


Os.2236.1.S1_at

Description gb:U78892.1
DB_XREF= gi:2286112
GEN=OsMADS8
TID=Os.2236.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2236 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds.
PROD=MADS box protein
FL= gb:U78892.1 gb:AK072867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g329489/11Agamous-like MADS box protein AGL9 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32930Os.49778.1.S1_at11/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.44431.2.S1_x_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.9810.1.S1_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32940Os.50887.1.A1_x_at11/119+19630152..19634193expressed protein
LOC_Os09g32944OsAffx.2442.1.S1_x_at1/119+19643053..19647823SBP domain containing protein
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010076biological_processmaintenance of floral meristem identity
GO:0010093biological_processspecification of floral organ identity
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2236.1.S1_at--803--2571Chr09:19658405..19658429 (25 bp)
AACGGATTCTTCCATTCCCTGGAAG
LOC_Os09g32948
Os.2236.1.S1_at--793--5851NONE
GAGCCCACCTTGCAGATCGGGTTTA
NONE
Os.2236.1.S1_at--1148--6391Chr09:19658452..19658965 (25 bp)
GATCGGGTTTACTCCAGAGCAGATG
LOC_Os09g32948
Os.2236.1.S1_at--343--671Chr09:19658963..19658987 (25 bp)
ATGAACAACTCATGCGTGACTGCCT
LOC_Os09g32948
Os.2236.1.S1_at--619--2071Chr09:19658996..19659020 (25 bp)
ACATGGCTACCCTGAACTCCTGAAG
LOC_Os09g32948
Os.2236.1.S1_at--630--3851NONE
CTGAAGGGCCGATGCGACAACCAAT
NONE
Os.2236.1.S1_at--283--2191Chr09:19659055..19659079 (25 bp)
ACACAGATCAAGTCGCACCATTAGA
LOC_Os09g32948
Os.2236.1.S1_at--535--1251Chr09:19659077..19659101 (25 bp)
AGATTGATCTTCTCCTACAAGAGTG
LOC_Os09g32948
Os.2236.1.S1_at--214--4251Chr09:19659114..19659138 (25 bp)
CCGTGTTTGTGTGCTAGCGTGTTGA
LOC_Os09g32948
Os.2236.1.S1_at--302--10392Chr11:24796552..24796571 (20 bp)
TTTTCTGATGTGATGCACGCACTTT
NONE
Os.2236.1.S1_at--410--4191Chr09:19659211..19659235 (25 bp)
CCGTACGTGACAGCCTATGGTTATA
LOC_Os09g32948
Target Sequence 
AACGGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGGTTTACTCCAGAGCAGATGAACAACTC
ATGCGTGACTGCCTTCATGCCGACATGGCTACCCTGAACTCCTGAAGGGCCGATGCGACAACCAATAAAAACGGATGTGA
CGACACAGATCAAGTCGCACCATTAGATTGATCTTCTCCTACAAGAGTGAGACTAGTAATTCCGTGTTTGTGTGCTAGCG
TGTTGAAACTTTTCTGATGTGATGCACGCACTTTTAATTATTATTAAGCGTTCAAGGACTAGTATGTGGTATAAAAGNCC
GTACGTGACAGCCTATGGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis