Browse Element(s) Details


Os.50887.1.A1_x_at

Description gb:AK066669.1
DB_XREF= gi:32976687
TID=Os.50887.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073G03, full insert sequence.
FL= gb:AK066669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3294011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32890NANA9+19608976..19609476hypothetical protein
LOC_Os09g32899NANA9+19610344..19611198NA
LOC_Os09g32910OsAffx.14216.1.S1_x_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32910Os.53165.1.S1_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32910OsAffx.27325.2.S1_x_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32920NANA9+19618356..19619770hypothetical protein
LOC_Os09g32930Os.49778.1.S1_at11/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.44431.2.S1_x_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.9810.1.S1_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32940Os.50887.1.A1_x_at11/119+19630152..19634193expressed protein
LOC_Os09g32944OsAffx.2442.1.S1_x_at1/119+19643053..19647823SBP domain containing protein
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50887.1.A1_x_at--647--7211Chr09:19633626..19633650 (25 bp)
GTCGATGTTATTGCCACATGCCTGA
LOC_Os09g32940
Os.50887.1.A1_x_at--793--1371Chr09:19633728..19633752 (25 bp)
AGAGCTGTCCTCTGGAGTCCGGAAT
LOC_Os09g32940
Os.50887.1.A1_x_at--52--9291Chr09:19633745..19633769 (25 bp)
TCCGGAATGTTGGTTGGTGCGCTCA
LOC_Os09g32940
Os.50887.1.A1_x_at--703--9711Chr09:19633767..19633791 (25 bp)
TCAACTGTGTGGAGATCCGTGCCTT
LOC_Os09g32940
Os.50887.1.A1_x_at--153--7291Chr09:19633785..19633809 (25 bp)
GTGCCTTGTCGCTGCAACTTGATGT
LOC_Os09g32940
Os.50887.1.A1_x_at--376--2511Chr09:19633800..19633824 (25 bp)
AACTTGATGTCCTTGCGTTTTGCAC
LOC_Os09g32940
Os.50887.1.A1_x_at--207--6811Chr09:19633816..19633840 (25 bp)
GTTTTGCACCTGATCCGATTACATG
LOC_Os09g32940
Os.50887.1.A1_x_at--698--6551Chr09:19633832..19633856 (25 bp)
GATTACATGTCCGTGCATTTGCTCC
LOC_Os09g32940
Os.50887.1.A1_x_at--152--10731Chr09:19633850..19633874 (25 bp)
TTGCTCCTCCTGATCGGATAACATA
LOC_Os09g32940
Os.50887.1.A1_x_at--937--5231Chr09:19633906..19633930 (25 bp)
GAATACTCCTTCGTAGCAACTAGCT
LOC_Os09g32940
Os.50887.1.A1_x_at--943--10131Chr09:19633987..19634011 (25 bp)
TATGCCTGTAGGGTGTCCATGTCAC
LOC_Os09g32940
Target Sequence 
GTCGATGTTATTGCCACATGCCTGAAAAGGATGATATTTGGTGTGGAAGTGGAATGCCATATGCAAGTGTAATAAAAGAA
GGGAGCATTTCTTTCCAAGAAGAGAGCTGTCCTCTGGAGTCCGGAATGTTGGTTGGTGCGCTCAACTGTGTGGAGATCCG
TGCCTTGTCGCTGCAACTTGATGTCCTTGCGTTTTGCACCTGATCCGATTACATGTCCGTGCATTTGCTCCTCCTGATCG
GATAACATAGAAAGCNTGAAACAGAGATCTACCTGTAGGAGAATACTCCTTCGTAGCAACTAGCTATCGAGCTGATTAGA
TTGATTGATTTNTGATTCCCCTGGGCTAATTGGAGAATTGTTATGCCTGTAGGGTGTCCATGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50887.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis