Browse Element(s) Details


Os.44431.2.S1_x_at

Description gb:NM_186449.1
DB_XREF= gi:34899983
GEN=P0039H02.9
TID=Os.44431.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44431 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative aldehyde oxidase (P0039H02.9), mRNA.
PROD=putative aldehyde oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0705011/11Aldehyde oxidase 4, putative, expressed
LOC_Os09g329301/11meiotic asynaptic mutant 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007130biological_processsynaptonemal complex formation
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0003677molecular_functionDNA binding
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44431.2.S1_x_at--952--7571Chr07:3471728..3471752 (25 bp)
GGGCTTCTGGTTCCTATCTAAACTA
LOC_Os07g07050
Os.44431.2.S1_x_at--32--5651Chr07:3471515..3471539 (25 bp)
GACAGGAGCGACCACAATTTTGCGT
LOC_Os07g07050
Os.44431.2.S1_x_at--627--8031Chr07:3471465..3471489 (25 bp)
GGAGTTTAAATCCTGCTGTTGACTT
LOC_Os07g07050
Os.44431.2.S1_x_at--857--2011Chr07:3471097..3471121 (25 bp)
ACTCAGATGGGCTGCTTGTCTCAGA
LOC_Os07g07050
Os.44431.2.S1_x_at--863--9471Chr07:3471079..3471103 (25 bp)
TCTCAGACGGGACTTGGACATACAA
LOC_Os07g07050
Os.44431.2.S1_x_at--376--7731Chr07:3471045..3471069 (25 bp)
GGTGGACACCATCCCAAAACAGTTC
LOC_Os07g07050
Os.44431.2.S1_x_at--369--7472Chr09:19621021..19621049 (23 bp)
GTGTGCTCTCTTCAAAAGCTTCTGG
LOC_Os09g32930
Os.44431.2.S1_x_at--1076--4771Chr07:3470573..3470597 (25 bp)
GCTGCCTCGGTGCATTGTGCAACAA
LOC_Os07g07050
Os.44431.2.S1_x_at--2--6091Chr07:3470522..3470546 (25 bp)
GAGTATCACTGTTCCAGGTCTGGAT
LOC_Os07g07050
Os.44431.2.S1_x_at--222--6431Chr07:3470480..3470504 (25 bp)
GATCTTGAAGTTCCTGCCATCATGC
LOC_Os07g07050
Os.44431.2.S1_x_at--84--1571Chr07:3470443..3470467 (25 bp)
AGCTATGCGGCTTAGACAACGTGGA
LOC_Os07g07050
Target Sequence 
GGGCTTCTGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGGAGCGACCACAATT
TTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGCTGTTGACTTGGGGCAGGTTGAAGGGGCTTTTGT
CCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGATGGGCTGCTTGTCTCAGACGGGACTTGGACAT
ACAAGATTCCTACGGTGGACACCATCCCAAAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTG
CTCTCTTCAAAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGC
AGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCA
CGGTGAAGGAGCTATGCGGCTTAGACAACGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44431.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis