Browse Element(s) Details


Os.44430.1.S2_at

Description gb:CB685931
DB_XREF= gi:29689656
DB_XREF=OSJNEf16M12.r
CLONE=OSJNEf16M12
TID=Os.44430.1
CNT=10
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.44430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative UVB-resistance protein (P0039H02.13), mRNA
FL= gb:AK120764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g070806/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44430.1.S2_at--269--1431Chr07:3490960..3490984 (25 bp)
AGAAACGGCAAACTGGCATCTCCCA
LOC_Os07g07080
Os.44430.1.S2_at--796--2371Chr07:3490929..3490953 (25 bp)
AAAAACCAGGACATCGGGCTTCGCT
LOC_Os07g07080
Os.44430.1.S2_at--964--4031Chr07:3490813..3490837 (25 bp)
CGATTCGCTCGATCCAGATTGAAGA
LOC_Os07g07080
Os.44430.1.S2_at--628--5691Chr07:3490775..3490799 (25 bp)
GACTTCAAGCGCTTCTATAGCAACG
LOC_Os07g07080
Os.44430.1.S2_at--776--6591Chr07:3490746..3490770 (25 bp)
GATTGTCAAGCCACAGGTCCAGTGA
LOC_Os07g07080
Os.44430.1.S2_at--811--3491Chr07:3490712..3490735 (24 bp)
CATGGCAGCCATCTCTCAAGAGTTG
LOC_Os07g07080
Os.44430.1.S2_at--928--1231NONE
AGTTGCGGATCTTTCTTAGGCTCAC
NONE
Os.44430.1.S2_at--856--2271NONE
AAATGTACAGTCAGTTTCGCCCAAC
NONE
Os.44430.1.S2_at--873--10631NONE
TTCGCCCAACATTAGGTTCCTTTAG
NONE
Os.44430.1.S2_at--511--3091NONE
AATAAAGCTCAACCCTTTCTTGGCT
NONE
Os.44430.1.S2_at--1144--7391NONE
GTGATCTCATATATAGCTGTGGCAG
NONE
Target Sequence 
AGAAACGGCAAACTGGCATCTCCCACAGTCCAAAAACCAGGACATCGGGCTTCGCTATACCTTCCCAGGGCACATCACCT
GAGGTTGGTGGCATCAAGGACAATGTTCCCANCCGCTGGTTCAAGCCAGAGGCNGACGCTCCGTCCTCGATTCGCTCGAT
CCAGATTGAAGAGCAGGCGATGAAGGACTTCAAGCGCTTCTATAGCAACGTGAGGATTGTCAAGCCACAGGTCCAGTGAT
GNCCATGNCCATGGCAGCCATCTCTCAAGAGTTGCGGATCTTTCTTAGGCTCACCATCACATTTTCAGTGGTTCAATGTA
CATTCAAATGTACAGTCAGTTTCGCCCAACATTAGGTTCCTTTAGTCAGAATAAAGCTCAACCCTTTCTTGGCTTCCGTT
TTCGCAGAAGTGATCTCATATATAGCTGTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44430.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis