Browse Element(s) Details


Os.31875.1.S1_at

Description gb:AK106594.1
DB_XREF= gi:32991803
TID=Os.31875.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative prolyl tRNA synthetase (P0039H02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H09, full insert sequence.
FL= gb:AK106594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g070608/11Anticodon binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31875.1.S1_at--304--6751Chr07:3483933..3483957 (25 bp)
GTTCATGCTTTCTCTAATAGTCTGG
LOC_Os07g07060
Os.31875.1.S1_at--304--8311Chr07:3483955..3483979 (25 bp)
TGGTTCCAAGGATCAAAGCATTTTT
LOC_Os07g07060
Os.31875.1.S1_at--827--1551Chr07:3483985..3484009 (25 bp)
AGCTATATTTTCTCCATTTTCCCAG
LOC_Os07g07060
Os.31875.1.S1_at--526--6571Chr07:3484009..3484033 (25 bp)
GATTCTCTGGGATCTTTTCTGATCA
LOC_Os07g07060
Os.31875.1.S1_at--423--10471Chr07:3484038..3484062 (25 bp)
TTACCCATTGAATGCTTGTGCTTCT
LOC_Os07g07060
Os.31875.1.S1_at--755--4931Chr07:3484051..3484075 (25 bp)
GCTTGTGCTTCTGATATTTCTAGTG
LOC_Os07g07060
Os.31875.1.S1_at--346--1191Chr07:3484090..3484114 (25 bp)
AGTAGTTAAATCTCTGTCCTGCTTG
LOC_Os07g07060
Os.31875.1.S1_at--164--10451Chr07:3484120..3484144 (25 bp)
TTAGGACAAAACTCACAACACGGTG
LOC_Os07g07060
Os.31875.1.S1_at--1114--10091NONE
TATGTAAGTCTGTTATCGTCCCAAA
NONE
Os.31875.1.S1_at--6--9411NONE
TCGTCCCAAATGTATGTAGTTCTGT
NONE
Os.31875.1.S1_at--685--6911NONE
GTAGTTCTGTCCACCAAATTTCTCG
NONE
Target Sequence 
GTTCATGCTTTCTCTAATAGTCTGGTTCCAAGGATCAAAGCATTTTTTTTCCAGCTATATTTTCTCCATTTTCCCAGATT
CTCTGGGATCTTTTCTGATCATAAATTACCCATTGAATGCTTGTGCTTCTGATATTTCTAGTGTAAATTAGCGATCGAGT
AGTTAAATCTCTGTCCTGCTTGTCGTATTAGGACAAAACTCACAACACGGTGCAATTGTATAATCAAAGTTCTCTTACTG
AANTTCACAGCTCTTATTTCTATGTAAGTCTGTTATCGTCCCAAATGTATGTAGTTCTGTCCACCAAATTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis