Browse Element(s) Details


Os.44431.1.S1_at

Description gb:AK122123.1
DB_XREF= gi:37991769
TID=Os.44431.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aldehyde oxidase (P0039H02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131J21, full insert sequence.
FL= gb:AK122123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0705011/11Aldehyde oxidase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44431.1.S1_at--241--2811Chr07:3470381..3470405 (25 bp)
AAGTTGGCAATCTTACCAGACGGCA
LOC_Os07g07050
Os.44431.1.S1_at--859--8211Chr07:3470376..3470400 (25 bp)
GGCAATCTTACCAGACGGCATATGT
LOC_Os07g07050
Os.44431.1.S1_at--719--4351Chr07:3470366..3470390 (25 bp)
CCAGACGGCATATGTCTTCTTTTTT
LOC_Os07g07050
Os.44431.1.S1_at--1133--1131Chr07:3470317..3470341 (25 bp)
AGTCCTTTAGCAATGGAGATAACAC
LOC_Os07g07050
Os.44431.1.S1_at--83--2971Chr07:3470306..3470330 (25 bp)
AATGGAGATAACACTGCCAGTTTTT
LOC_Os07g07050
Os.44431.1.S1_at--588--2912Chr07:3470262..3470286 (25 bp)
AAGGAGGTACTCAATAGTGAACATG
LOC_Os07g07050
Os.44431.1.S1_at--347--131Chr07:3470225..3470249 (25 bp)
ATTAATAGTGGTGAACATGAGCAAA
LOC_Os07g07050
Os.44431.1.S1_at--701--1091Chr07:3470175..3470199 (25 bp)
AGTGGTGAACATAAGCAGGCGTTGC
LOC_Os07g07050
Os.44431.1.S1_at--957--1511Chr07:3470162..3470186 (25 bp)
AGCAGGCGTTGCATAATGTATATTG
LOC_Os07g07050
Os.44431.1.S1_at--390--6671Chr07:3470155..3470179 (25 bp)
GTTGCATAATGTATATTGAGCGTAT
LOC_Os07g07050
Os.44431.1.S1_at--19--5871Chr07:3470138..3470162 (25 bp)
GAGCGTATAAAGAGGGATTTTGTTT
LOC_Os07g07050
Target Sequence 
AAGTTGGCAATCTTACCAGACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAATGG
AGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTGAACATGAGCATAATGTATATTA
ATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTTAATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTAT
ATTGAGCGTATAAAGAGGGATTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis