Browse Element(s) Details


OsAffx.22469.1.S1_x_at

Description gb:NM_186448.1
DB_XREF= gi:34899981
GEN=P0039H02.8
TID=OsAffx.22469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0039H02.8 (P0039H02.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0704011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22469.1.S1_x_at--703--5351Chr07:3469395..3469419 (25 bp)
GAAGACGAATGATCCCGCGAAGCTT
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--377--6351Chr07:3469405..3469429 (25 bp)
GATCCCGCGAAGCTTAAGGCGAAAC
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--594--6591Chr07:3469437..3469461 (25 bp)
GATTGACACCAAGATACAAGACCTT
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--533--5631Chr07:3469441..3469465 (25 bp)
GACACCAAGATACAAGACCTTCAAG
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--123--951Chr07:3469472..3469496 (25 bp)
AGGAAGACATCCTGAGGCAGCTGAA
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--201--991Chr07:3469521..3469545 (25 bp)
AGGAGGCAAGTCCAAGAATGCCATT
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--853--1471Chr07:3469535..3469559 (25 bp)
AGAATGCCATTGAAGAGAAGCCTGC
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--594--5971Chr07:3469549..3469573 (25 bp)
GAGAAGCCTGCACAGACATTGGAAA
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--653--5671Chr07:3469563..3469587 (25 bp)
GACATTGGAAAAGGGCATCGAGCAC
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--708--4971Chr07:3469577..3469601 (25 bp)
GCATCGAGCACAACAAGCCCATTGA
LOC_Os07g07040
OsAffx.22469.1.S1_x_at--1144--2251Chr07:3469588..3469612 (25 bp)
AACAAGCCCATTGAGGAGAAGCCCG
LOC_Os07g07040
Target Sequence 
GAAGACGAATGATCCCGCGAAGCTTAAGGCGAAACTGGAGAAGATTGACACCAAGATACAAGACCTTCAAGCTAAGAAGG
AAGACATCCTGAGGCAGCTGAAGGAGCAGCTGAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAG
CCTGCACAGACATTGGAAAAGGGCATCGAGCACAACAAGCCCATTGAGGAGAAGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22469.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis