Browse Element(s) Details


Os.28059.5.A1_x_at

Description gb:NM_186436.1
DB_XREF= gi:34899957
GEN=P0428D12.20
TID=Os.28059.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.3 (P0039H02.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0428D12.20 (P0428D12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0699011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g06960Os.44434.1.S1_at9/117+3424580..3426767pentatricopeptide, putative
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28059.5.A1_x_at--375--1671Chr07:3443326..3443350 (25 bp)
AGCCGTGTCGCCGTCGTGTTACGCG
LOC_Os07g06990
Os.28059.5.A1_x_at--193--9431Chr07:3443339..3443363 (25 bp)
TCGTGTTACGCGTCGCCGGCGGCTT
LOC_Os07g06990
Os.28059.5.A1_x_at--942--10591Chr07:3443362..3443386 (25 bp)
TTCGTCCGTGCGAAGACGCGGCGTC
LOC_Os07g06990
Os.28059.5.A1_x_at--1127--2911Chr07:3443451..3443475 (25 bp)
AAGGCAAGCTCAGGGTCGGGTCTCC
LOC_Os07g06990
Os.28059.5.A1_x_at--2--7711Chr07:3443468..3443492 (25 bp)
GGGTCTCCCATCGTCATCGTGGAGG
LOC_Os07g06990
Os.28059.5.A1_x_at--656--511Chr07:3443477..3443501 (25 bp)
ATCGTCATCGTGGAGGCACCGGTGA
LOC_Os07g06990
Os.28059.5.A1_x_at--429--8011Chr07:3443488..3443512 (25 bp)
GGAGGCACCGGTGATGCTCAAGACC
LOC_Os07g06990
Os.28059.5.A1_x_at--607--8851Chr07:3443499..3443523 (25 bp)
TGATGCTCAAGACCGCCGCGTCGGT
LOC_Os07g06990
Os.28059.5.A1_x_at--115--9311Chr07:3444480..3444504 (25 bp)
TCGCCATCGGAACCTACCTGTTGGA
LOC_Os07g06990
Os.28059.5.A1_x_at--882--5431Chr07:3444489..3444513 (25 bp)
GAACCTACCTGTTGGACGGCAAGTA
LOC_Os07g06990
Os.28059.5.A1_x_at--240--8111Chr07:3444502..3444526 (25 bp)
GGACGGCAAGTATTTCAAGACACTG
LOC_Os07g06990
Target Sequence 
AGCCGTGTCGCCGTCGTGTTACGCGTCGCCGGCGGCTTCGTCCGTGCGAAGACGCGGCGTCGTCGGCGTCGTCCGGTGCG
CGCCGGATAGCGGGCGAGGTGGAGACGGCGGCGGCGGCGGCGGGAAAGGCAAGCTCAGGGTCGGGTCTCCCATCGTCATC
GTGGAGGCACCGGTGATGCTCAAGACCGCCGCGTCGGTGCCGTCGCTCAGGCACAACGCCGGCCAGGTCAAGGCCGGCGA
CGTCGGGGTGATGGCGCGGAAGCCGAAGGACGTCTGGGCCGTGCGGCTCGCCATCGGAACCTACCTGTTGGACGGCAAGT
ATTTCAAGACACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28059.5.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis