Browse Element(s) Details


Os.18373.1.S1_at

Description gb:AK107727.1
DB_XREF= gi:32992936
TID=Os.18373.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.5 (P0039H02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F04, full insert sequence.
FL= gb:AK107727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0702011/11SOH1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18373.1.S1_at--948--391Chr07:3459760..3459784 (25 bp)
ATCAGCATCAGTGCCGTCGACTGTG
LOC_Os07g07020
Os.18373.1.S1_at--485--7831Chr07:3460812..3460836 (25 bp)
GGTCAACTCAAGGACAACATTGTGC
LOC_Os07g07020
Os.18373.1.S1_at--790--1232Chr07:3460855..3460879 (25 bp)
AGATTTTTCTTTTCTCTGTAGGCCT
LOC_Os07g07020
Os.18373.1.S1_at--24--8771Chr07:3460871..3460895 (25 bp)
TGTAGGCCTTTATTTCAGACTCAGA
LOC_Os07g07020
Os.18373.1.S1_at--962--8411Chr07:3460875..3460899 (25 bp)
GGCCTTTATTTCAGACTCAGACAAT
LOC_Os07g07020
Os.18373.1.S1_at--837--9651Chr07:3460891..3460915 (25 bp)
TCAGACAATTTAGAAGCTTAACAGT
LOC_Os07g07020
Os.18373.1.S1_at--1085--4891Chr07:3460906..3460930 (25 bp)
GCTTAACAGTTATTTGTGCTGCTGG
LOC_Os07g07020
Os.18373.1.S1_at--883--3091Chr07:3460949..3460973 (25 bp)
AATATGCCATGTACGCTTGGTCCTT
LOC_Os07g07020
Os.18373.1.S1_at--1041--4311Chr07:3460955..3460979 (25 bp)
CCATGTACGCTTGGTCCTTGAATGA
LOC_Os07g07020
Os.18373.1.S1_at--215--3591Chr07:3460986..3461010 (25 bp)
CATTTATGTGGCCTTGTAGTTAGAT
LOC_Os07g07020
Os.18373.1.S1_at--738--3111Chr07:3461019..3461043 (25 bp)
AATATTTTGTTCAGGCCTAGTTTAG
LOC_Os07g07020
Target Sequence 
ATCAGCATCAGTGCCGTCGACTGTGGTTCCACCTGTTGCTGCACCCCCATCAGCTTTGCTACCTATGTCAGCAGCTGGTG
CATCTGCCATGTCTCCTATGCAGTTTGCAGGAACTCCTGGCACCAATATCCCAAAGAACGACATGAGAAATGTCATGGGT
GGACAGGGTGGTAGAAAGAGAAAGANAGGNTNNTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGTGCNAA
GGGAAGAGTAATCTTCAGATTTTTCTTTTCTCTGTAGGCCTTTATTTCAGACTCAGACAATTTAGAAGCTTAACAGTTAT
TTGTGCTGCTGGAGATGTAATTTAGATAACAATATGCCATGTACGCTTGGTCCTTGAATGATTGGCTCATTTATGTGGCC
TTGTAGTTAGATAGTGTACTAATATTTTGTTCAGGCCTAGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis