Browse Element(s) Details


Os.7388.1.S1_s_at

Description gb:AK069302.1
DB_XREF= gi:32979326
TID=Os.7388.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.6 (P0039H02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018E23, full insert sequence.
FL= gb:AK069302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4238011/11expressed protein
LOC_Os07g0703011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42360OsAffx.3487.1.S1_at11/113+23520278..23520748hypothetical protein
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein
LOC_Os03g42400OsAffx.13307.1.S1_at11/113+23546428..23546879hypothetical protein
LOC_Os03g42410OsAffx.25490.1.S1_at11/113+23549703..23551723B3 DNA binding domain containing protein
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7388.1.S1_s_at--146--2112Chr07:3464246..3464270 (25 bp)
ACATGATATGAATGCTCGCCAGCGA
LOC_Os07g07030
Os.7388.1.S1_s_at--809--8832Chr07:3464243..3464267 (25 bp)
TGATATGAATGCTCGCCAGCGATCA
LOC_Os07g07030
Os.7388.1.S1_s_at--180--672Chr07:3464239..3464263 (25 bp)
ATGAATGCTCGCCAGCGATCAAGAC
LOC_Os07g07030
Os.7388.1.S1_s_at--456--5272Chr07:3464237..3464261 (25 bp)
GAATGCTCGCCAGCGATCAAGACGA
LOC_Os07g07030
Os.7388.1.S1_s_at--84--9112Chr07:3464234..3464258 (25 bp)
TGCTCGCCAGCGATCAAGACGACAA
LOC_Os07g07030
Os.7388.1.S1_s_at--823--4792Chr07:3464233..3464257 (25 bp)
GCTCGCCAGCGATCAAGACGACAAA
LOC_Os07g07030
Os.7388.1.S1_s_at--421--5872Chr07:3464033..3464057 (25 bp)
GAGCCTGCAAACTGAACTTGCTGCA
LOC_Os07g07030
Os.7388.1.S1_s_at--512--2392Chr07:3464025..3464049 (25 bp)
AAACTGAACTTGCTGCAGATCATCT
LOC_Os07g07030
Os.7388.1.S1_s_at--9--3552Chr07:3464005..3464029 (25 bp)
CATCTTGCACGATCGTCTAACTTTG
LOC_Os07g07030
Os.7388.1.S1_s_at--1026--10732Chr07:3464001..3464025 (25 bp)
TTGCACGATCGTCTAACTTTGATGA
LOC_Os07g07030
Os.7388.1.S1_s_at--19--5112Chr07:3463999..3464023 (25 bp)
GCACGATCGTCTAACTTTGATGATG
LOC_Os07g07030
Target Sequence 
ACATGATATGAATGCTCGCCAGCGATCAAGACGACAAAGTGTTACTCCTGGAGAACGGNTCTGCTCATCTGGCACGACGT
AATGAACTGTATGCAGCTAGGCGTGACAAACCATGCACTCAATCGATTGCATTGGAGTGCCCTGAGGATTGTAGCTCGTC
GTTGCTAAANTCCAACGCCTTCCTTTGAAACAACCGGTGATGTGCCAGCTACATCGAGCCTGCAAACTGAACTTGCTGCA
GATCATCTTGCACGATCGTCTAACTTTGATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7388.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis