Browse Element(s) Details


OsAffx.13304.1.S1_at

Description tigr:9631.m04076
TID=OsAffx.13304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ankyrin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4235010/11TPR Domain containing protein, expressed
LOC_Os08g235802/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42290Os.53859.1.S1_at10/113+23487757..23493159B3 DNA binding domain containing protein, expressed
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed
LOC_Os03g42334NANA3+23509659..23510195hypothetical protein
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42360OsAffx.3487.1.S1_at11/113+23520278..23520748hypothetical protein
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13304.1.S1_at--1074--7371Chr03:23515964..23515985 (22 bp)
GTGAGGCCATGGACCTTGACCCTGA
LOC_Os03g42350
OsAffx.13304.1.S1_at--1150--871Chr03:23515964..23515988 (25 bp)
AGGCCATGGACCTTGACCCTGATGA
LOC_Os03g42350
OsAffx.13304.1.S1_at--923--8431Chr03:23515965..23515989 (25 bp)
GGCCATGGACCTTGACCCTGATGAT
LOC_Os03g42350
OsAffx.13304.1.S1_at--265--4431Chr03:23515966..23515990 (25 bp)
GCCATGGACCTTGACCCTGATGATG
LOC_Os03g42350
OsAffx.13304.1.S1_at--1041--4331Chr03:23515967..23515991 (25 bp)
CCATGGACCTTGACCCTGATGATGC
LOC_Os03g42350
OsAffx.13304.1.S1_at--867--3492Chr03:23515968..23515992 (25 bp)
CATGGACCTTGACCCTGATGATGCA
LOC_Os03g42350
OsAffx.13304.1.S1_at--141--5852Chr03:23515972..23515996 (25 bp)
GACCTTGACCCTGATGATGCAACCC
LOC_Os03g42350
OsAffx.13304.1.S1_at--347--1651Chr03:23515973..23515997 (25 bp)
ACCTTGACCCTGATGATGCAACCCT
LOC_Os03g42350
OsAffx.13304.1.S1_at--299--4311Chr03:23515974..23515998 (25 bp)
CCTTGACCCTGATGATGCAACCCTG
LOC_Os03g42350
OsAffx.13304.1.S1_at--312--3591Chr03:23515975..23515999 (25 bp)
CTTGACCCTGATGATGCAACCCTGC
LOC_Os03g42350
Target Sequence 
GTGAGGCCATGGACCTTGACCCTGATGATGCAACCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis