Browse Element(s) Details


Os.53859.1.S1_at

Description gb:AK100451.1
DB_XREF= gi:32985660
TID=Os.53859.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090P20, full insert sequence.
FL= gb:AK100451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4229010/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42260OsAffx.13302.1.S1_at11/113+23467293..23467859expressed protein
LOC_Os03g42270OsAffx.27522.1.S1_x_at5/113+23470646..23476093retrotransposon protein, putative, LINE subclass
LOC_Os03g42280Os.54144.1.S1_at11/113+23477854..23482609B3 DNA binding domain containing protein, expressed
LOC_Os03g42284NANA3+23484355..23484896hypothetical protein
LOC_Os03g42290Os.53859.1.S1_at10/113+23487757..23493159B3 DNA binding domain containing protein, expressed
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed
LOC_Os03g42334NANA3+23509659..23510195hypothetical protein
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53859.1.S1_at--1055--9871NONE
TACATCATTACCCTTGGCAGGCAGT
NONE
Os.53859.1.S1_at--139--6851Chr03:23492646..23492669 (24 bp)
GTTTGCTATAAGATACCTCCCGGAG
LOC_Os03g42290
Os.53859.1.S1_at--843--2211Chr03:23492678..23492702 (25 bp)
AAACCTTGACGCTCCTGACGACGGG
LOC_Os03g42290
Os.53859.1.S1_at--467--7591Chr03:23492848..23492872 (25 bp)
GGGCTTGCCATGAAAGTCCACATCA
LOC_Os03g42290
Os.53859.1.S1_at--894--2851Chr03:23492861..23492885 (25 bp)
AAGTCCACATCATTCGTCACAACGA
LOC_Os03g42290
Os.53859.1.S1_at--1002--6171Chr03:23492886..23492910 (25 bp)
GAGGAGCTAGTTTCCACAGCTTCTA
LOC_Os03g42290
Os.53859.1.S1_at--375--6031Chr03:23492927..23492951 (25 bp)
GAGATGGACCTCTAGTAGCACTTTT
LOC_Os03g42290
Os.53859.1.S1_at--879--9551Chr03:23493001..23493025 (25 bp)
TCTTTCTTTGTGTAGCTTTCTGCTG
LOC_Os03g42290
Os.53859.1.S1_at--582--2311Chr03:23493068..23493092 (25 bp)
AAAGGAGCTCTCTACTGCAATATTT
LOC_Os03g42290
Os.53859.1.S1_at--441--2631Chr03:23493117..23493141 (25 bp)
AACCTCGCTGATGGTAGTTGTCCTA
LOC_Os03g42290
Os.53859.1.S1_at--772--1231Chr03:23493132..23493156 (25 bp)
AGTTGTCCTACTTGCGAATTTCTAC
LOC_Os03g42290
Target Sequence 
TACATCATTACCCTTGGCAGGCAGTTTGCTATAAGATACCTCCCGGAGGGGGAGCAAACCTTGACGCTCCTGACGACGGG
GACGGGCAAGGCATGGCAGGTCAAGATGCGCCCTCGGAGCGGCGACGCACGGATGTTCACCCTCGGCTGGCGCGATTTCG
TCCGCGACAACCGTCTGCAAACTGAGGACATCTGCCTCTTCCAGCTGACGAAGAACAGTGAGAGGGGGCTTGCCATGAAA
GTCCACATCATTCGTCACAACGAGAGGAGCTAGTTTCCACAGCTTCTAGTAGTAGAAGATCAGAGAGATGGACCTCTAGT
AGCACTTTTTCATTAGTGGTAGACTGGCAATGAGAAGAGTTATTAGCTTCTATTTAGCTCTTTCTTTGTGTAGCTTTCTG
CTGGAGTTGAAACCTGAAAATTATGGGCCTGTCTAAATAATGGTTAAAGGAGCTCTCTACTGCAATATTTATCCAGAGTT
GGCAGCTTTTAAACAACCTCGCTGATGGTAGTTGTCCTACTTGCGAATTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis