Browse Element(s) Details


OsAffx.13302.1.S1_at

Description tigr:9631.m04067
TID=OsAffx.13302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42260OsAffx.13302.1.S1_at11/113+23467293..23467859expressed protein
LOC_Os03g42270OsAffx.27522.1.S1_x_at5/113+23470646..23476093retrotransposon protein, putative, LINE subclass
LOC_Os03g42280Os.54144.1.S1_at11/113+23477854..23482609B3 DNA binding domain containing protein, expressed
LOC_Os03g42284NANA3+23484355..23484896hypothetical protein
LOC_Os03g42290Os.53859.1.S1_at10/113+23487757..23493159B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13302.1.S1_at--530--8231Chr03:23467387..23467411 (25 bp)
GGCAACAGCCGGACGACGTGTCGTC
LOC_Os03g42260
OsAffx.13302.1.S1_at--301--2491Chr03:23467390..23467414 (25 bp)
AACAGCCGGACGACGTGTCGTCGTT
LOC_Os03g42260
OsAffx.13302.1.S1_at--988--5751Chr03:23467401..23467425 (25 bp)
GACGTGTCGTCGTTGGTGGATGCCA
LOC_Os03g42260
OsAffx.13302.1.S1_at--668--7511Chr03:23467416..23467440 (25 bp)
GTGGATGCCAACAACGCGCGGCGCC
LOC_Os03g42260
OsAffx.13302.1.S1_at--1005--7751Chr03:23467480..23467504 (25 bp)
GGTGATCGGTTACCGACGAGGCGGC
LOC_Os03g42260
OsAffx.13302.1.S1_at--1061--7491Chr03:23467547..23467571 (25 bp)
GTGGTCGTGATTGGTGATCACCGAC
LOC_Os03g42260
OsAffx.13302.1.S1_at--693--1871Chr03:23467570..23467594 (25 bp)
ACGAGGCGGCTTCACCGCCATGATG
LOC_Os03g42260
OsAffx.13302.1.S1_at--92--4911Chr03:23467578..23467602 (25 bp)
GCTTCACCGCCATGATGGTGGTGGC
LOC_Os03g42260
OsAffx.13302.1.S1_at--315--4011Chr03:23467669..23467693 (25 bp)
CGTCGTCATGGTGATCGGGACGGTA
LOC_Os03g42260
OsAffx.13302.1.S1_at--516--5811Chr03:23467681..23467705 (25 bp)
GATCGGGACGGTAGCCGGAGACCGT
LOC_Os03g42260
OsAffx.13302.1.S1_at--739--5991Chr03:23467698..23467722 (25 bp)
GAGACCGTCGTCTTGGGTGGCGAGG
LOC_Os03g42260
Target Sequence 
GGCAACAGCCGGACGACGTGTCGTCGTTGGTGGATGCCAACAACGCGCGGCGCCCGCCGTGGCCGCCGCCATGGTGACCG
TGGCCGTGGTCGTGGTGATCGGTTACCGACGAGGCGGCGGCGCCGTCACCGCCGTGGCCGCCACCGCCATGGTGATGGCC
GTGGTCGTGATTGGTGATCACCGACGAGGCGGCTTCACCGCCATGATGGTGGTGGCGGTGATCGGTGGTGACCGACAAGG
CGGCGTCGTGGCCGCCGTGGTGGTGGCGGTGGTGGTGGTGGTCGTCGTCATGGTGATCGGGACGGTAGCCGGAGACCGTC
GTCTTGGGTGGCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis