Browse Element(s) Details


Os.26722.1.S1_at

Description gb:CB653322
DB_XREF= gi:29657047
DB_XREF=OSJNEc04D19.r
CLONE=OSJNEc04D19
TID=Os.26722.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26722 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_197589.1 (A.thaliana) T-complex protein 1, beta subunit (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4222011/11T-complex protein 1, beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42210OsAffx.25484.1.S1_at11/113+23438913..23439290hypothetical protein
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42260OsAffx.13302.1.S1_at11/113+23467293..23467859expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26722.1.S1_at--105--3031Chr03:23444320..23444344 (25 bp)
AATGCTGGTCTGGACAGTGCTGAGC
LOC_Os03g42220
Os.26722.1.S1_at--90--3171Chr03:23444380..23444404 (25 bp)
AATTGCACTGCTGGAATCGATGTCA
LOC_Os03g42220
Os.26722.1.S1_at--919--2891Chr03:23444535..23444559 (25 bp)
AAGGTGAAGCAAGCCATCCTTCTCT
LOC_Os03g42220
Os.26722.1.S1_at--1116--691Chr03:23444596..23444620 (25 bp)
ATGAGATCATAACTTGTGCCCCACG
LOC_Os03g42220
Os.26722.1.S1_at--43--8691Chr03:23444638..23444662 (25 bp)
TGTGATCACACAAACTCTTCCTTAT
LOC_Os03g42220
Os.26722.1.S1_at--755--6931Chr03:23444668..23444692 (25 bp)
GTAGGATCACGTTTGTCTGTCAAGT
LOC_Os03g42220
Os.26722.1.S1_at--32--8691Chr03:23444718..23444742 (25 bp)
TGTGATCCCGTTTTGAGTGCTGTAC
LOC_Os03g42220
Os.26722.1.S1_at--810--6591Chr03:23444762..23444786 (25 bp)
GTTGGCTTCATTTTTATCGAACCAG
LOC_Os03g42220
Os.26722.1.S1_at--581--9351Chr03:23444778..23444802 (25 bp)
TCGAACCAGCTTATGTTTCAACCGC
LOC_Os03g42220
Os.26722.1.S1_at--557--4431Chr03:23444801..23444825 (25 bp)
GCCATCCTAGGCTTCTATTGCAATG
LOC_Os03g42220
Os.26722.1.S1_at--868--10411Chr03:23444877..23444901 (25 bp)
TTAGTGTAGTGGCTGCTGTTTCCGC
LOC_Os03g42220
Target Sequence 
AATGCTGGTCTGGACAGTGCTGAGCTGATCTCTCAGCTCCGAGCTGAGCACCACAAGGAGAATTGCACTGCTGGAATCGA
TGTCATCACAGGCAGCGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAGCCATCCTTCTCT
CCGCCACCGAGGCGGNTGAGATGATTCTCAGGGTTGATGAGATCATAACTTGTGCCCCACGCAGGAGAGAGGATAGGATG
TGATCACACAAACTCTTCCTTATCTTATGTAGGATCACGTTTGTCTGTCAAGTTTTGTGNGGTTTCACGCTTGGTTAGTG
TGATCCCGTTTTGAGTGCTGTACTCTAAGCAACTAGGGTGGAGTTGGCTTCATTTTTATCGAACCAGCTTATGTTTCAAC
CGCCATCCTAGGCTTCTATTGCAATGTGTATCTTTGGGTTGCAATTTTGCAATTTGCAAAGTGCTTGTCTTTACACTTTA
GTGTAGTGGCTGCTGTTTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis