Browse Element(s) Details


OsAffx.32109.2.S1_x_at

Description tigr:9633.m00677
TID=OsAffx.32109.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0762611/11expressed protein
LOC_Os07g275008/11hypothetical protein
LOC_Os03g422005/11Dof domain, zinc finger family protein, expressed
LOC_Os05g076202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07590Os.56292.1.S1_at3/115+4048547..4050037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07590Os.56292.1.S1_x_at2/115+4048547..4050037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07600Os.51097.1.S1_at11/115+4054026..4056408expressed protein
LOC_Os05g07610NANA5+4061788..4062336hypothetical protein
LOC_Os05g07620OsAffx.32109.2.S1_x_at2/115+4069961..4070335hypothetical protein
LOC_Os05g07620OsAffx.32109.3.S1_x_at1/115+4069961..4070335hypothetical protein
LOC_Os05g07626Os.51188.1.S1_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.2.S1_x_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.1.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.3.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07632Os.12102.1.S1_at11/115+4074790..4078739haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein
LOC_Os05g07650Os.12314.1.S1_at11/115+4085128..4087899Endomembrane protein 70 containing protein, expressed
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32109.2.S1_x_at--312--9674Chr07:16068286..16068307 (22 bp)
TCAGCCGGCGGTGTCAGTGAGAAAG
LOC_Os07g27500
OsAffx.32109.2.S1_x_at--298--5751Chr05:4072083..4072107 (25 bp)
GACGGCTTGTTGAGCATGCGCGGGT
LOC_Os05g07626
OsAffx.32109.2.S1_x_at--513--7553Chr07:16068171..16068195 (25 bp)
GTGGCCACGCTGTTCGCCGCCATGG
LOC_Os07g27500
OsAffx.32109.2.S1_x_at--24--4353Chr07:16069513..16069537 (25 bp)
CCATGGCGTTCCAGGCGGCGCTGCA
LOC_Os07g27500
OsAffx.32109.2.S1_x_at--79--4254Chr08:20865828..20865852 (25 bp)
CCGGGAAGGCGATGCTGTACCTGAT
NONE
OsAffx.32109.2.S1_x_at--543--2953Chr08:20865823..20865847 (25 bp)
AAGGCGATGCTGTACCTGATCGTCA
NONE
OsAffx.32109.2.S1_x_at--540--9273Chr07:16069337..16069360 (24 bp)
TCCTGATGCTGCTCGCCGTGGGCGA
LOC_Os07g27500
OsAffx.32109.2.S1_x_at--169--4073Chr07:16069294..16069318 (25 bp)
CGAGGAGGGTCACCGCGAGGCTGAT
LOC_Os07g27500
OsAffx.32109.2.S1_x_at--652--6211Chr05:4071781..4071805 (25 bp)
GAGGCTGATCGCCAACATGATGACG
LOC_Os05g07626
OsAffx.32109.2.S1_x_at--308--5796Chr07:16069208..16069232 (25 bp)
GACGACTACCGGCTCATGGCGTTCG
LOC_Os07g27500
OsAffx.32109.2.S1_x_at--1153--1996Chr07:16069204..16069228 (25 bp)
ACTACCGGCTCATGGCGTTCGTCGG
LOC_Os07g27500
Target Sequence 
TCAGCCGGCGGTGTCAGTGAGAAAGCCGGTGGCGGCGGCGAGGAGTGGCTGCAAGAACAGGACGGCTTGTTGAGCATGCG
CGGGTGGCTGATGGCGGTGGCCACGCTGTTCGCCGCCATGGCGTTCCAGGCGGCGCTGCAGCCGCCGGGGTGGATGCCGA
GGCCGCGCGACTGGTTCGCGGCGCTGCTCGCCGCCGACCCGGCGGCGGCCGCCGTCACGAGGGACCAGGCCGGGAAGGCG
ATGCTGTACCTGATCGTCAACACCTGCACCTTCGCCACGTCGCTCGCCGTGCTCCTGATGCTGCTCGCCGTGGGCGACGC
CGGCGGCGGCGGCGGCGGATGCGCGTCGAGGAGGGTCACCGCGAGGCTGATCGCCAACATGATGACGGCCGTNGCGCTGT
TCGCCGCGGCGACGTTCGCGCTCTGCNCCGCCGACGACTACCGGCTCATGGCGTTCGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32109.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis