Browse Element(s) Details


Os.12102.1.S1_at

Description gb:AK066130.1
DB_XREF= gi:32976148
TID=Os.12102.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052M23, full insert sequence.
FL= gb:AK066130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0763211/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07590Os.56292.1.S1_at3/115+4048547..4050037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07590Os.56292.1.S1_x_at2/115+4048547..4050037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07600Os.51097.1.S1_at11/115+4054026..4056408expressed protein
LOC_Os05g07610NANA5+4061788..4062336hypothetical protein
LOC_Os05g07620OsAffx.32109.2.S1_x_at2/115+4069961..4070335hypothetical protein
LOC_Os05g07620OsAffx.32109.3.S1_x_at1/115+4069961..4070335hypothetical protein
LOC_Os05g07626Os.51188.1.S1_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.2.S1_x_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.1.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.3.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07632Os.12102.1.S1_at11/115+4074790..4078739haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein
LOC_Os05g07650Os.12314.1.S1_at11/115+4085128..4087899Endomembrane protein 70 containing protein, expressed
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12102.1.S1_at--294--4771Chr05:4075352..4075376 (25 bp)
GCTGCTCACAACTGTACCATGATGG
LOC_Os05g07632
Os.12102.1.S1_at--887--6971Chr05:4075339..4075363 (25 bp)
GTACCATGATGGCAGTTGCACTCAT
LOC_Os05g07632
Os.12102.1.S1_at--151--8271Chr05:4075329..4075353 (25 bp)
GGCAGTTGCACTCATTGGTGCTCAT
LOC_Os05g07632
Os.12102.1.S1_at--782--9591Chr05:4075319..4075342 (24 bp)
TCATTGGTGCTCATCCTGCGTATGA
LOC_Os05g07632
Os.12102.1.S1_at--447--8191Chr05:4075006..4075030 (25 bp)
GGAAGCTGACAGTAGACACCATCTT
LOC_Os05g07632
Os.12102.1.S1_at--200--9011Chr05:4074977..4075001 (25 bp)
TGAATTCTTTACCTCCCAATACTGA
LOC_Os05g07632
Os.12102.1.S1_at--1041--1411Chr05:4074940..4074964 (25 bp)
AGAAAATAGCACCATGCATCCTCCC
LOC_Os05g07632
Os.12102.1.S1_at--162--9271Chr05:4074922..4074946 (25 bp)
TCCTCCCTACTGTGCTGTGTATATA
LOC_Os05g07632
Os.12102.1.S1_at--413--7431Chr05:4074906..4074930 (25 bp)
GTGTATATAGCATTCCATGTTGGTT
LOC_Os05g07632
Os.12102.1.S1_at--886--8811Chr05:4074850..4074874 (25 bp)
TGTTGTTGCATACCTCCATTCTGGA
LOC_Os05g07632
Os.12102.1.S1_at--272--4291Chr05:4074838..4074862 (25 bp)
CCTCCATTCTGGATGTACTAGATGT
LOC_Os05g07632
Target Sequence 
GCTGCTCACAACTGTACCATGATGGCAGTTGCACTCATTGGTGCTCATCCTGCGTATGAGCTGGTACAGGCNGATCTCGC
CATCGCAAAATACAGNGAGCTCTCGGTNATCAATCTCAGAAGGTTGTTTGCNCATAAGGGGTTAAGTTTCATGGACTTGC
AGAAGCAGATCATCGAGAGGTCACCTCCNAAGAGGAAGCTGACAGTAGACACCATCTTCTNATGAATTCTTTACCTCCCA
ATACTGAAAAAGAGAGAAAAGAAAATAGCACCATGCATCCTCCCTACTGTGCTGTGTATATAGCATTCCATGTTGGTTAG
ATTACATAGAAAGCTGATGTTAGATGATCTGTTGTTGCATACCTCCATTCTGGATGTACTAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis