Browse Element(s) Details


Os.51097.1.S1_at

Description gb:AK060646.1
DB_XREF= gi:32970664
TID=Os.51097.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G05, full insert sequence.
FL= gb:AK060646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0760011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07580NANA5+4044608..4045808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g07590Os.56292.1.S1_at3/115+4048547..4050037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07590Os.56292.1.S1_x_at2/115+4048547..4050037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07600Os.51097.1.S1_at11/115+4054026..4056408expressed protein
LOC_Os05g07610NANA5+4061788..4062336hypothetical protein
LOC_Os05g07620OsAffx.32109.2.S1_x_at2/115+4069961..4070335hypothetical protein
LOC_Os05g07620OsAffx.32109.3.S1_x_at1/115+4069961..4070335hypothetical protein
LOC_Os05g07626Os.51188.1.S1_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.2.S1_x_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.1.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.3.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07632Os.12102.1.S1_at11/115+4074790..4078739haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51097.1.S1_at--288--811Chr05:4055839..4055863 (25 bp)
ATGGGATGGTACTAGCCCGGAGATC
LOC_Os05g07600
Os.51097.1.S1_at--6--511Chr05:4055861..4055885 (25 bp)
ATCGAGCCTTCAGCCTTGGATATGA
LOC_Os05g07600
Os.51097.1.S1_at--647--10571Chr05:4056026..4056050 (25 bp)
TTCTACCAGAGGTCACCGGTCAGAC
LOC_Os05g07600
Os.51097.1.S1_at--1015--1771Chr05:4056040..4056064 (25 bp)
ACCGGTCAGACCAAGAGCATGTACT
LOC_Os05g07600
Os.51097.1.S1_at--215--4431Chr05:4056136..4056160 (25 bp)
GCCATGGGCCATTGCGTTGGATGAT
LOC_Os05g07600
Os.51097.1.S1_at--927--4151Chr05:4056209..4056233 (25 bp)
CGCCGCCGGTCGATGATATGCAAAC
LOC_Os05g07600
Os.51097.1.S1_at--545--8591Chr05:4056255..4056279 (25 bp)
TGGTACACCTTCTCATTCTGCCAAA
LOC_Os05g07600
Os.51097.1.S1_at--1001--2531Chr05:4056278..4056302 (25 bp)
AACTCAAACTCACCATGTACTTCAC
LOC_Os05g07600
Os.51097.1.S1_at--780--1751Chr05:4056301..4056325 (25 bp)
ACCTGCTCTGCGATTGTAACTTGTT
LOC_Os05g07600
Os.51097.1.S1_at--1088--9811Chr05:4056317..4056341 (25 bp)
TAACTTGTTCTCGACTTCATGTGAC
LOC_Os05g07600
Os.51097.1.S1_at--540--3511Chr05:4056334..4056358 (25 bp)
CATGTGACAGTCTAGCTAGTTCAGC
LOC_Os05g07600
Target Sequence 
ATGGGATGGTACTAGCCCGGAGATCGAGCCTTCAGCCTTGGATATGAATTTGATCAAGATGTGTTGTCTTACAAATAACA
GGAAATTCGCATGGATGTGCATGATGCAAATGTAGTGAATTTATACTTGATTTGAACGTTTGATGTCGGCGATGGTTTTG
ACAGTGTTTGAGAGAGCACTGACAGTATTCTACCAGAGGTCACCGGTCAGACCAAGAGCATGTACTACAGAGTTTCTGTG
AATTGGAGTATTGGACCAATCATGCAACAACTTTGTAACCGAGAAACAGGGATTGAGGCCATGGGCCATTGCGTTGGATG
ATGATTCAGGAGCCTACAGATTGGCTCTAGACTCCACCTCTCTCTGAATCCGCCGCCGGTCGATGATATGCAAACCTTGG
ATGATTGAATACAGTTTGGTACACCTTCTCATTCTGCCAAACTCAAACTCACCATGTACTTCACCTGCTCTGCGATTGTA
ACTTGTTCTCGACTTCATGTGACAGTCTAGCTAGTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis