Browse Element(s) Details


OsAffx.32109.1.S1_x_at

Description tigr:9635.m02662
TID=OsAffx.32109.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2750011/11hypothetical protein
LOC_Os05g076261/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27500OsAffx.32109.1.S1_x_at11/117+16067834..16070028hypothetical protein
LOC_Os07g27500OsAffx.32109.2.S1_x_at8/117+16067834..16070028hypothetical protein
LOC_Os07g27500OsAffx.32109.3.S1_x_at2/117+16067834..16070028hypothetical protein
LOC_Os07g27500Os.51188.1.S1_at2/117+16067834..16070028hypothetical protein
LOC_Os07g27510NANA7+16073739..16077546retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27520OsAffx.21161.1.S1_at1/117+16081437..16087644transposon protein, putative, unclassified
LOC_Os07g27520OsAffx.15726.1.S1_at1/117+16081437..16087644transposon protein, putative, unclassified
LOC_Os07g27530OsAffx.16443.1.S1_at11/117+16088620..16089721hypothetical protein
LOC_Os07g27540NANA7+16092416..16094188retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32109.1.S1_x_at--69--10731Chr07:16068396..16068641 (25 bp)
TTGCAGAGCAGTTCATCAGGCTGGT
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--445--911Chr07:16068379..16068403 (25 bp)
AGGCTGGTGATCGACATCGGCGACA
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--431--493Chr07:16069724..16069748 (25 bp)
ATCGGCGACAGGACGATCCAGGTCC
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--563--1431Chr07:16068315..16068339 (25 bp)
AGAACATCGGACGTCAGGCTGCCGC
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--772--10611Chr07:16068211..16068235 (25 bp)
TTCGGCTTGTTGTGCATGCGCGGAT
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--5--6151Chr07:16068044..16068068 (25 bp)
GAGGGTCACCGCGAGGCTGATCACC
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--653--6211Chr07:16068032..16068056 (25 bp)
GAGGCTGATCACCAACATGATGACG
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--905--1211Chr07:16067997..16068021 (25 bp)
AGTTCGCCGCGGATACGTTCGCGCT
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--829--7191Chr07:16067895..16067919 (25 bp)
GTCGTGTTCGTTCAGGTGCAATCTT
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--672--9011Chr07:16067879..16067903 (25 bp)
TGCAATCTTGCTATGCCGTCTCGGA
LOC_Os07g27500
OsAffx.32109.1.S1_x_at--855--9071Chr07:16067871..16067895 (25 bp)
TGCTATGCCGTCTCGGAGAGGCGAC
LOC_Os07g27500
Target Sequence 
TTGCAGAGCAGTTCATCAGGCTGGTGATCGACATCGGCGACAGGACGATCCAGGTCCCTCTCAATGGCCACACCGTCGTT
CAGAACATCGGACGTCAGGCTGCCGCTGCCGTCGCCGGCGGTGTCAGTGAGAAAGCCGGTAGTGCTGGTGGTAGCGGCGA
GGAGTGGCTGCAACAGCAGGGCGGCTTCGGCTTGTTGTGCATGCGCGGATGGCTGGATGGTGGTGGTGGCCACGCTGTTC
GCCGCCATGGCGTTCCAGGCGGCGCTACAGCCGCCGGGTGGATGCCGAGGCCCAGGGACTGGTTAGCGGTGCTGCTCGCC
GTGGGCGATGGCGGCAGCGGATGCGCGTCGAGGAGGGTCACCGCGAGGCTGATCACCAACATGATGACGGCCGTCGCGCA
GTTCGCCGCGGATACGTTCGCGCTCTGCGCCGCCGACGACTACCGCCTACCGGCTCATGGCGTTCGTCGGCACCGTCGTG
GCCGTGTACGCCGCCATCACCGTCGTGTTCGTTCAGGTGCAATCTTGCTATGCCGTCTCGGAGAGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32109.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis