Browse Element(s) Details


OsAffx.16443.1.S1_at

Description tigr:9635.m02666
TID=OsAffx.16443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2753011/11hypothetical protein
LOC_Os07g494901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g147101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27500OsAffx.32109.1.S1_x_at11/117+16067834..16070028hypothetical protein
LOC_Os07g27500OsAffx.32109.2.S1_x_at8/117+16067834..16070028hypothetical protein
LOC_Os07g27500OsAffx.32109.3.S1_x_at2/117+16067834..16070028hypothetical protein
LOC_Os07g27500Os.51188.1.S1_at2/117+16067834..16070028hypothetical protein
LOC_Os07g27510NANA7+16073739..16077546retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27520OsAffx.21161.1.S1_at1/117+16081437..16087644transposon protein, putative, unclassified
LOC_Os07g27520OsAffx.15726.1.S1_at1/117+16081437..16087644transposon protein, putative, unclassified
LOC_Os07g27530OsAffx.16443.1.S1_at11/117+16088620..16089721hypothetical protein
LOC_Os07g27540NANA7+16092416..16094188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27550NANA7+16096882..16098769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27560NANA7+16099528..16101749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27570OsAffx.22896.1.S1_x_at1/117+16102932..16105689transposon protein, putative, unclassified
LOC_Os07g27580NANA7+16106979..16107737HAD superfamily phosphatase containing protein
LOC_Os07g27590NANA7+16110134..16111154retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16443.1.S1_at--462--8851Chr07:16089289..16089313 (25 bp)
TGATCGTTCCGACGCTTGCGTTTGA
LOC_Os07g27530
OsAffx.16443.1.S1_at--858--5791Chr07:16089279..16089303 (25 bp)
GACGCTTGCGTTTGAACCACGTGTG
LOC_Os07g27530
OsAffx.16443.1.S1_at--982--6851Chr07:16089270..16089294 (25 bp)
GTTTGAACCACGTGTGTCGCAGGAC
LOC_Os07g27530
OsAffx.16443.1.S1_at--233--2631Chr07:16089265..16089289 (25 bp)
AACCACGTGTGTCGCAGGACGATGT
LOC_Os07g27530
OsAffx.16443.1.S1_at--759--7472Chr09:8738196..8738219 (24 bp)
GTGTGTCGCAGGACGATGTAGATCA
LOC_Os09g14710
OsAffx.16443.1.S1_at--11--1211Chr07:16089240..16089264 (25 bp)
AGATCAAAATTTGCCCGCGGACACG
LOC_Os07g27530
OsAffx.16443.1.S1_at--150--10691Chr07:16089099..16089254 (25 bp)
TTGCCCGCGGACACGGATCTCGAGA
LOC_Os07g27530
OsAffx.16443.1.S1_at--593--5631Chr07:16089090..16089245 (25 bp)
GACACGGATCTCGAGAGTGCACCTG
LOC_Os07g27530
OsAffx.16443.1.S1_at--305--7971Chr07:16089085..16089108 (24 bp)
GGATCTCGAGAGTGCACCTGCTGAC
LOC_Os07g27530
OsAffx.16443.1.S1_at--467--10571Chr07:16088674..16088698 (25 bp)
TTCTCGTTCTCAGAGAACTCCGGTG
LOC_Os07g27530
OsAffx.16443.1.S1_at--785--5972Chr07:29641761..29641785 (25 bp)
GAGAACTCCGGTGGAGATAGATCAC
LOC_Os07g49490
Target Sequence 
TGATCGTTCCGACGCTTGCGTTTGAACCACGTGTGTCGCAGGACGATGTAGATCAAAATTTGCCCGCGGACACGGATCTC
GAGAGTGCACCTGCTGACCAAGATCATCGCATCCAATATTGGAAGACGAAATTTGAGGTAGCGGAACTCGAGAGGACTGT
GCTGGAAGTAAAGAAGGAGCTGGCTGTGGAAACACTCCGAGGTCGTGAGGTGAGGTTCAACTCGTATCTGAAGAGTTGCT
GCACGTCCATGACAAGAGTCTGTAGGGAGCTCCGAGTACCCCGTGGGGATCCCGAGGAGTCGGCGGCCGGATACATCTCG
TGGTTGAATGGGGCCTGCACCCAGCTCGAAGGCATCGACAAGCGTATTGACGAGGCTCTGAAGCAGGAGTGCCGTCGATC
GAGCCGATATGCCGGAGGGCATGTATTGGCTTGCATACGAGATCATCGCCCGCAACTGCACCTCGAGTTCCTCCACGAAG
GGTTTTCTCGTTCTCAGAGAACTCCGGTGGAGATAGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis