Browse Element(s) Details


OsAffx.32109.3.S1_x_at

Description tigr:9631.m04060
TID=OsAffx.32109.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dof domain, zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4220011/11Dof domain, zinc finger family protein, expressed
LOC_Os07g275002/11hypothetical protein
LOC_Os05g076261/11expressed protein
LOC_Os05g076201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g42140OsAffx.13301.1.S1_at9/113+23407690..23408183hypothetical protein
LOC_Os03g42150NANA3+23409424..23412158retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42210OsAffx.25484.1.S1_at11/113+23438913..23439290hypothetical protein
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32109.3.S1_x_at--141--8051Chr03:23427124..23427148 (25 bp)
GGAGATTCGTCAGCCGGTGGTGTTA
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--1078--3371Chr03:23427114..23427138 (25 bp)
CAGCCGGTGGTGTTAGTGAGAAAAC
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--53--8771Chr03:23427104..23427128 (25 bp)
TGTTAGTGAGAAAACCGGTGGTGCT
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--840--6231Chr03:23427044..23427067 (24 bp)
GATGGCTTGTTGTGCATGCGCGGGC
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--542--2953Chr08:20865823..20865847 (25 bp)
AAGGCGATGCTGTACCTGATCGTCA
NONE
OsAffx.32109.3.S1_x_at--722--9091Chr03:23426810..23426834 (25 bp)
TGCTCCCTGATGCTGTTCGCCGTCG
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--706--713Chr07:16067910..16068040 (25 bp)
ATGATGACGGCCGTCGCGCTGTTCG
LOC_Os07g27500
OsAffx.32109.3.S1_x_at--309--5793Chr07:16069138..16069232 (25 bp)
GACGACTACCGGCTCATGGACCGTT
LOC_Os07g27500
OsAffx.32109.3.S1_x_at--42--771Chr03:23426669..23426693 (25 bp)
ATGGACCGTTCGTCGGCACCGTCGT
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--162--9431Chr03:23426648..23426672 (25 bp)
TCGTGGCCGCAGTCACCGTCGTGGT
LOC_Os03g42200
OsAffx.32109.3.S1_x_at--671--9011Chr03:23426616..23426640 (25 bp)
TGCAATCTTGCTCTGCCGTTTCGGG
LOC_Os03g42200
Target Sequence 
GGAGATTCGTCAGCCGGTGGTGTTAGTGAGAAAACCGGTGGTGCTGGTGGCGGCGGCGGCGAGGAGTGGATGCAAGAACA
GGATGGCTTGTTGTGCATGCGCGGGCGGCGCTGCGGCCGCCGGGGTGGATGCCTGCCGAGGCCGCGTGACTGGTTCGCGG
CGCTGCTCGCCGCCGACCCGGCGGCGGCCGCCGTCACGAGGGACCAGGCCGGGAAGGCGATGCTGTACCTGATCGTCAAC
ACCTGCACCTTCGCCACGTCGCTCGCCGTGCTCCCTGATGCTGTTCGCCGTCGGCGGCGGCTGCGCGTCGAGGAGGGTCA
CCGCGTGGCTGATCACCAACATGATGACGGCCGTCGCGCTGTTCGCCGCGGCGACGTTCGCGCTCTGCGCCGCCGACGAC
TACCGGCTCATGGACCGTTCGTCGGCACCGTCGTGGCCGCAGTCACCGTCGTGGTCGTCAGGTGCAATCTTGCTCTGCCG
TTTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32109.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis