Browse Element(s) Details


OsAffx.13301.1.S1_at

Description tigr:9631.m04054
TID=OsAffx.13301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g421409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g42110Os.16888.1.A1_at11/113+23392451..23396597N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os03g42120OsAffx.3482.1.S1_at11/113+23398866..23401009hypothetical protein
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g42140OsAffx.13301.1.S1_at9/113+23407690..23408183hypothetical protein
LOC_Os03g42150NANA3+23409424..23412158retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13301.1.S1_at--33--1051Chr03:23408066..23408085 (20 bp)
AGGGACATTGACTGGGTATACGTTC
LOC_Os03g42140
OsAffx.13301.1.S1_at--1095--5671Chr03:23407765..23408082 (25 bp)
GACATTGACTGGGTATACGTTCACG
LOC_Os03g42140
OsAffx.13301.1.S1_at--1046--31NONE
ATTGACTGGGTATACGTTCACGTTC
NONE
OsAffx.13301.1.S1_at--1076--8911NONE
TGACTGGGTATACGTTCACGTTCCA
NONE
OsAffx.13301.1.S1_at--1148--8611Chr03:23407756..23407778 (23 bp)
TGGGTATACGTTCACGTTCCAGATC
LOC_Os03g42140
OsAffx.13301.1.S1_at--336--10171Chr03:23407752..23407776 (25 bp)
TATACGTTCACGTTCCAGATCGAGC
LOC_Os03g42140
OsAffx.13301.1.S1_at--1148--9931Chr03:23407750..23407774 (25 bp)
TACGTTCACGTTCCAGATCGAGCAC
LOC_Os03g42140
OsAffx.13301.1.S1_at--515--6711Chr03:23407747..23407771 (25 bp)
GTTCACGTTCCAGATCGAGCACGTA
LOC_Os03g42140
OsAffx.13301.1.S1_at--460--1891Chr03:23407743..23407767 (25 bp)
ACGTTCCAGATCGAGCACGTACGGA
LOC_Os03g42140
OsAffx.13301.1.S1_at--35--6691Chr03:23407741..23407765 (25 bp)
GTTCCAGATCGAGCACGTACGGACG
LOC_Os03g42140
OsAffx.13301.1.S1_at--284--9211Chr03:23407739..23407763 (25 bp)
TCCAGATCGAGCACGTACGGACGGT
LOC_Os03g42140
Target Sequence 
AGGGACATTGACTGGGTATACGTTCACGTTCCAGATCGAGCACGTACGGACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis