Browse Element(s) Details


Os.21103.1.S1_x_at

Description gb:AK073307.1
DB_XREF= gi:32983330
TID=Os.21103.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full insert sequence.
FL= gb:AK073307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4213011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g223701/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42090OsAffx.25482.1.S1_at11/113+23379126..23379539hypothetical protein
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g42110Os.16888.1.A1_at11/113+23392451..23396597N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os03g42120OsAffx.3482.1.S1_at11/113+23398866..23401009hypothetical protein
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g42140OsAffx.13301.1.S1_at9/113+23407690..23408183hypothetical protein
LOC_Os03g42150NANA3+23409424..23412158retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045431molecular_functionflavonol synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21103.1.S1_x_at--256--1792Chr10:11244432..11244557 (24 bp)
ACCGTGCTCTACCAGGACGATGTCG
LOC_Os10g22370
Os.21103.1.S1_x_at--387--5451Chr03:23404703..23404727 (25 bp)
GAACGTCCAGATCACGCATTTCAGG
LOC_Os03g42130
Os.21103.1.S1_x_at--595--9631Chr03:23404683..23404707 (25 bp)
TCAGGAAGAATTAACGCGCCGGCTA
LOC_Os03g42130
Os.21103.1.S1_x_at--712--4551Chr03:23404668..23404692 (25 bp)
GCGCCGGCTAGATCATGTTCAGTAA
LOC_Os03g42130
Os.21103.1.S1_x_at--343--1311Chr03:23404637..23404661 (25 bp)
AGATGATGATGCGTGGACAACCATA
LOC_Os03g42130
Os.21103.1.S1_x_at--395--5611Chr03:23404622..23404646 (25 bp)
GACAACCATATAGCCTTTGCGTCAT
LOC_Os03g42130
Os.21103.1.S1_x_at--691--3191Chr03:23404562..23404586 (25 bp)
CAATCGTATGATGTGGCTTCTCTAT
LOC_Os03g42130
Os.21103.1.S1_x_at--525--4911Chr03:23404547..23404571 (25 bp)
GCTTCTCTATCTGCCGGTGATGGTA
LOC_Os03g42130
Os.21103.1.S1_x_at--277--3831Chr03:23404537..23404561 (25 bp)
CTGCCGGTGATGGTAATGTGACATT
LOC_Os03g42130
Os.21103.1.S1_x_at--180--7691Chr03:23404504..23404528 (25 bp)
GGGTTTGTGAGATACTTCCTTCACT
LOC_Os03g42130
Os.21103.1.S1_x_at--106--10671Chr03:23404489..23404513 (25 bp)
TTCCTTCACTTAACTTTTACGAATG
LOC_Os03g42130
Target Sequence 
ACCGTGCTCTACCAGGACGATGTCGGNGGCCTCGACGTCCGNCGCCGATCCGACNGCNAGTGGGTGCGCGTNAGGCCCGT
CCCTCACTCCTTCATCATCAACGTCGGCGACATCATCCAGGTGTGGAGCAATGACAGGTACGAGAGCGCGGAGCACCGGG
TGGCGGTGAACGTGGAGAAGGAGAGGTTCTCCATCCCTTTCTTCTTCAACCCGGCGGGCCACACCATGGTGGAGCCACTG
GAGGAGGTCGTGAGCGACGAGAGCCCGGCCAGGTACAACCCCTACAACTGGGGCGAATTCTTCAGCACCAGGAAGAACAG
CAACTTCAAGAAGCTGGACGTGGAGAACGTCCAGATCACGCATTTCAGGAAGAATTAACGCGCCGGCTAGATCATGTTCA
GTAAATTTTCAGATGATGATGCGTGGACAACCATATAGCCTTTGCGTCATAAGTTAATAATGTCTGTGACAGTATATCAT
GTAAACAATCGTATGATGTGGCTTCTCTATCTGCCGGTGATGGTAATGTGACATTGTAGAAGAGGGTTTGTGAGATACTT
CCTTCACTTAACTTTTACGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21103.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis