Browse Element(s) Details


OsAffx.25482.1.S1_at

Description tigr:9631.m04049
TID=OsAffx.25482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4209011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42070Os.17403.1.S1_a_at11/113+23364503..23367047Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g42080OsAffx.3481.1.S1_at11/113+23371745..23372125expressed protein
LOC_Os03g42090OsAffx.25482.1.S1_at11/113+23379126..23379539hypothetical protein
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g42110Os.16888.1.A1_at11/113+23392451..23396597N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os03g42120OsAffx.3482.1.S1_at11/113+23398866..23401009hypothetical protein
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25482.1.S1_at--774--8471Chr03:23379474..23379498 (25 bp)
TGGCGACAACGAGGGAGAGAGCGGC
LOC_Os03g42090
OsAffx.25482.1.S1_at--85--8451Chr03:23379449..23379473 (25 bp)
GGCCAACGGCCTAGGCCTTGCCAGG
LOC_Os03g42090
OsAffx.25482.1.S1_at--703--2571Chr03:23379445..23379469 (25 bp)
AACGGCCTAGGCCTTGCCAGGCCAG
LOC_Os03g42090
OsAffx.25482.1.S1_at--968--4311Chr03:23379434..23379458 (25 bp)
CCTTGCCAGGCCAGATCGGCATCAC
LOC_Os03g42090
OsAffx.25482.1.S1_at--98--1291Chr03:23379422..23379446 (25 bp)
AGATCGGCATCACCGCCGTGGAGCC
LOC_Os03g42090
OsAffx.25482.1.S1_at--464--1631Chr03:23379263..23379287 (25 bp)
AGCGGCACGGCGAACAGCAACTCCG
LOC_Os03g42090
OsAffx.25482.1.S1_at--631--9431Chr03:23379200..23379224 (25 bp)
TCGGGCTTCTGGCACCTGTCCTTTT
LOC_Os03g42090
OsAffx.25482.1.S1_at--500--8711Chr03:23379184..23379208 (25 bp)
TGTCCTTTTGGCCATCGTCGCGATC
LOC_Os03g42090
OsAffx.25482.1.S1_at--649--3651Chr03:23379180..23379204 (25 bp)
CTTTTGGCCATCGTCGCGATCCAAG
LOC_Os03g42090
OsAffx.25482.1.S1_at--86--2751Chr03:23379158..23379182 (25 bp)
AAGAAGACAACAATGCTAGCGCTGC
LOC_Os03g42090
OsAffx.25482.1.S1_at--196--5371Chr03:23379156..23379180 (25 bp)
GAAGACAACAATGCTAGCGCTGCCC
LOC_Os03g42090
Target Sequence 
TGGCGACAACGAGGGAGAGAGCGGCGGCCAACGGCCTAGGCCTTGCCAGGCCAGATCGGCATCACCGCCGTGGAGCCCTC
ATCTCGCCAAGATCGCCGAGCCATCGGACTCCTTCGCGTCAGCGTCGTCGTCGTCTTCCTACACCTCCTCCTCCTTGTCG
TCCTCCGCCAAGAGCACTCGCCGGCGGATATCGCTGCGTGACCTCCTCCTCAGCGGCACGGCGAACAGCAACTCCGCCAT
CGCTGCGGGCGCCGCCGCCGCCGCCGAGAGGTCATCGGGCTTCTGGCACCTGTCCTTTTGGCCATCGTCGCGATCCAAGA
AGACAACAATGCTAGCGCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis