Browse Element(s) Details


OsAffx.13300.1.S1_at

Description tigr:9631.m04050
TID=OsAffx.13300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4210011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42070Os.17403.1.S1_a_at11/113+23364503..23367047Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g42080OsAffx.3481.1.S1_at11/113+23371745..23372125expressed protein
LOC_Os03g42090OsAffx.25482.1.S1_at11/113+23379126..23379539hypothetical protein
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g42110Os.16888.1.A1_at11/113+23392451..23396597N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os03g42120OsAffx.3482.1.S1_at11/113+23398866..23401009hypothetical protein
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g42140OsAffx.13301.1.S1_at9/113+23407690..23408183hypothetical protein
LOC_Os03g42150NANA3+23409424..23412158retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13300.1.S1_at--192--7331Chr03:23388648..23388672 (25 bp)
GTGCAGCTCAGTTCATGGATGCCAT
LOC_Os03g42100
OsAffx.13300.1.S1_at--121--8571Chr03:23388633..23388657 (25 bp)
TGGATGCCATTCTCAACCGGAACGG
LOC_Os03g42100
OsAffx.13300.1.S1_at--764--711Chr03:23388594..23388618 (25 bp)
ATGATCTCGCTGACTCGAGCGTTAA
LOC_Os03g42100
OsAffx.13300.1.S1_at--1002--4631Chr03:23388576..23388600 (25 bp)
GCGTTAATCTGCTGGATTCCATCGG
LOC_Os03g42100
OsAffx.13300.1.S1_at--568--71Chr03:23388561..23388585 (25 bp)
ATTCCATCGGCGCTTCTAACAAGAG
LOC_Os03g42100
OsAffx.13300.1.S1_at--234--8511Chr03:23388310..23388334 (25 bp)
TGGCAGCATTGCTGTCACCAACAGG
LOC_Os03g42100
OsAffx.13300.1.S1_at--187--1611Chr03:23388276..23388300 (25 bp)
AGCTGCTGCACCTCTGAAAATGATT
LOC_Os03g42100
OsAffx.13300.1.S1_at--1013--3731Chr03:23388242..23388266 (25 bp)
CTCAAGAATCTCCTGTTGCTGCTAA
LOC_Os03g42100
OsAffx.13300.1.S1_at--210--7231Chr03:23388217..23388241 (25 bp)
GTCGAATGGCAAGGCTCAATCTGGC
LOC_Os03g42100
OsAffx.13300.1.S1_at--319--6571Chr03:23388036..23388060 (25 bp)
GATTCTGCAGAACCTTGTACCAAAT
LOC_Os03g42100
OsAffx.13300.1.S1_at--237--6991Chr03:23387649..23387673 (25 bp)
GTACGCACCGATTGCTTACAACGGG
LOC_Os03g42100
Target Sequence 
GTGCAGCTCAGTTCATGGATGCCATTCTCAACCGGAACGGCGATCCGGGCTTCGATGATCTCGCTGACTCGAGCGTTAAT
CTGCTGGATTCCATCGGCGCTTCTAACAAGAGAAAGATTCAGGAGCAAGGCAGGCTAGATGACCAAACGAAAAGTAGGAA
ATCTGCGAAGAAGGCTGGCTCGAAGCGGGGAAAGAAGGCGGCGCAATGTGAAGGTGAAGATGGCAGCATTGCTGTCACCA
ACAGGCAAAGCTTGAGCTGCTGCACCTCTGAAAATGATTCGATTGGTTCTCAAGAATCTCCTGTTGCTGCTAAGTCGAAT
GGCAAGGCTCAATCTGGCCATCGGTCAGCAACCGATCCCCAGAGCCTCTATGCAAGGAAAAGAAGAGAGAGGATCAATGA
GAGGCTCAAGATTCTGCAGAACCTTGTACCAAATGGAACCAAAGTAGATATCAGCACTATGCTTGAAGAGGCAATGCATT
ACGTGAAGTTCTTGCAGCTTCAAATCAAGCTCCTCAGCTCTGATGAAATGTGGATGTACGCACCGATTGCTTACAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis