Browse Element(s) Details


OsAffx.3481.1.S1_at

Description tigr:9631.m04048
TID=OsAffx.3481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4208011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42070Os.17403.1.S1_a_at11/113+23364503..23367047Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g42080OsAffx.3481.1.S1_at11/113+23371745..23372125expressed protein
LOC_Os03g42090OsAffx.25482.1.S1_at11/113+23379126..23379539hypothetical protein
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g42110Os.16888.1.A1_at11/113+23392451..23396597N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3481.1.S1_at--807--9271Chr03:23371828..23371852 (25 bp)
TCCTGTCCCCGGGAAGGATGAGGAC
LOC_Os03g42080
OsAffx.3481.1.S1_at--1150--7332Chr03:23371861..23371885 (25 bp)
GTGCAACCGCGGAAGACGGCCGGAG
LOC_Os03g42080
OsAffx.3481.1.S1_at--384--9211Chr03:23371906..23371930 (25 bp)
TGCCACAACGGAAGACGGCGCAGCG
LOC_Os03g42080
OsAffx.3481.1.S1_at--282--4131Chr03:23371924..23371948 (25 bp)
CGCAGCGGCTGGTGTCATAGCAGCT
LOC_Os03g42080
OsAffx.3481.1.S1_at--416--7751Chr03:23371934..23371958 (25 bp)
GGTGTCATAGCAGCTCGTGGCCACA
LOC_Os03g42080
OsAffx.3481.1.S1_at--835--3551Chr03:23371939..23371963 (25 bp)
CATAGCAGCTCGTGGCCACAGCGGG
LOC_Os03g42080
OsAffx.3481.1.S1_at--134--8371Chr03:23371972..23371996 (25 bp)
GGCGGGCGACGGCTTGATGAACAAG
LOC_Os03g42080
OsAffx.3481.1.S1_at--344--8871Chr03:23371986..23372010 (25 bp)
TGATGAACAAGGTAGCACAGCTGAT
LOC_Os03g42080
OsAffx.3481.1.S1_at--376--3211Chr03:23371993..23372017 (25 bp)
CAAGGTAGCACAGCTGATGGACGGC
LOC_Os03g42080
OsAffx.3481.1.S1_at--1049--4791Chr03:23372027..23372051 (25 bp)
GCTCGATCTGGGAAGGAGACAGTAC
LOC_Os03g42080
OsAffx.3481.1.S1_at--986--5991Chr03:23372065..23372089 (25 bp)
GAGAGGAAAAATTCGTGGGCCCACG
LOC_Os03g42080
Target Sequence 
TCCTGTCCCCGGGAAGGATGAGGACGGCGGCTCGTGCAACCGCGGAAGACGGCCGGAGCAGAGCGGGACGATGGTGGCTG
CCACAACGGAAGACGGCGCAGCGGCTGGTGTCATAGCAGCTCGTGGCCACAGCGGGGGGACGGCGGCGGGCGACGGCTTG
ATGAACAAGGTAGCACAGCTGATGGACGGCGTCGACGGCGCTCGATCTGGGAAGGAGACAGTACGGGAGAGGAGAGAGAG
AGGAAAAATTCGTGGGCCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis