Browse Element(s) Details


Os.16888.1.A1_at

Description gb:AK071544.1
DB_XREF= gi:32981567
TID=Os.16888.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100D05, full insert sequence.
FL= gb:AK071544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4211011/11N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42080OsAffx.3481.1.S1_at11/113+23371745..23372125expressed protein
LOC_Os03g42090OsAffx.25482.1.S1_at11/113+23379126..23379539hypothetical protein
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g42110Os.16888.1.A1_at11/113+23392451..23396597N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os03g42120OsAffx.3482.1.S1_at11/113+23398866..23401009hypothetical protein
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g42140OsAffx.13301.1.S1_at9/113+23407690..23408183hypothetical protein
LOC_Os03g42150NANA3+23409424..23412158retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16888.1.A1_at--340--3311Chr03:23393107..23393131 (25 bp)
CACACACGCCATGTTGTGGGATCAA
LOC_Os03g42110
Os.16888.1.A1_at--482--5931Chr03:23392905..23392929 (25 bp)
GAGCATCAGGTCAGGCTGTTCAGAA
LOC_Os03g42110
Os.16888.1.A1_at--339--8651Chr03:23392847..23392871 (25 bp)
TGGGCTGCAATATCAACCCCTATTT
LOC_Os03g42110
Os.16888.1.A1_at--983--8851Chr03:23392819..23392843 (25 bp)
TGATCCTCTATGTCTGTGTTCCGTA
LOC_Os03g42110
Os.16888.1.A1_at--710--4231Chr03:23392799..23392823 (25 bp)
CCGTATGTTCTTTGTCGGGATGATA
LOC_Os03g42110
Os.16888.1.A1_at--868--6471Chr03:23392778..23392802 (25 bp)
GATACTTTGGAGTTCAGCTACCCAT
LOC_Os03g42110
Os.16888.1.A1_at--1073--10291Chr03:23392754..23392778 (25 bp)
TTTCCCTCTGTTTACTGTTGAGACA
LOC_Os03g42110
Os.16888.1.A1_at--32--10211Chr03:23392619..23392643 (25 bp)
TATTAGCTCGGTGGATTTGGGCATT
LOC_Os03g42110
Os.16888.1.A1_at--96--10791Chr03:23392603..23392627 (25 bp)
TTGGGCATTGAAATCCTACGGGTAT
LOC_Os03g42110
Os.16888.1.A1_at--334--9931Chr03:23392587..23392611 (25 bp)
TACGGGTATATCCTGTACTGCTTTG
LOC_Os03g42110
Os.16888.1.A1_at--374--1811Chr03:23392512..23392536 (25 bp)
ACCCCGCCTTCATTGGATGTAGATA
LOC_Os03g42110
Target Sequence 
CACACACGCCATGTTGTGGGATCAAATTACTGCTTCATGAATGTCTTTGAGGACAGAANTCCTGGACGTGCCATCATCAT
ATCTGTTATAGATAATCTTGTGAAGGGAGCATCAGGTCAGGCTGTTCAGAACCTTAATCTGATGATGGGTCTGCCAGAGA
ACACTGGGCTGCAATATCAACCCCTATTTCCTTGATCCTCTATGTCTGTGTTCCGTATGTTCTTTGTCGGGATGATACTT
TGGAGTTCAGCTACCCATTTCCCTCTGTTTACTGTTGAGACAAGGTGCTCAACATCAGAGTGTAACCAAGACAAATTTTC
TCAAAGAGTAGCTTGGTTTGTGCTGTTGTAGTTTTTATAGAGATAAATGACAATTTAGTAGTTTAATGAGAATATTAGCT
CGGTGGATTTGGGCATTGAAATCCTACGGGTATATCCTGTACTGCTTTGTGGTTATGAAATCAAATAAAAGTGTAAACCT
CAGTCAAGAGGCATCAATCACCCCGCCTTCATTGGATGTAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16888.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis