Browse Element(s) Details


OsAffx.25484.1.S1_at

Description tigr:9631.m04061
TID=OsAffx.25484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4221011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42210OsAffx.25484.1.S1_at11/113+23438913..23439290hypothetical protein
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25484.1.S1_at--114--7391Chr03:23438959..23438983 (25 bp)
GTGAGGCAATAATCTCCGTAGTTGA
LOC_Os03g42210
OsAffx.25484.1.S1_at--849--1231Chr03:23438978..23439002 (25 bp)
AGTTGAGAGCCCTGAGACGCGGACA
LOC_Os03g42210
OsAffx.25484.1.S1_at--1053--1791Chr03:23438994..23439018 (25 bp)
ACGCGGACACTTGACGTCGGTCCAT
LOC_Os03g42210
OsAffx.25484.1.S1_at--236--551Chr03:23439017..23439041 (25 bp)
ATCCGCTGTTCCTGCTAGTCATATA
LOC_Os03g42210
OsAffx.25484.1.S1_at--579--9591Chr03:23439035..23439059 (25 bp)
TCATATAGGTGACTCGGGCATGGTT
LOC_Os03g42210
OsAffx.25484.1.S1_at--657--7351Chr03:23439076..23439100 (25 bp)
GTGAAGTTGCTCAGCGTCAGGTTAG
LOC_Os03g42210
OsAffx.25484.1.S1_at--14--2171Chr03:23439119..23439143 (25 bp)
ACACCGCCACATTCCTTTAGAGGAG
LOC_Os03g42210
OsAffx.25484.1.S1_at--4--2971Chr03:23439146..23439170 (25 bp)
AATGGAATGGGATCTCCTTGCCGGT
LOC_Os03g42210
OsAffx.25484.1.S1_at--239--4951Chr03:23439175..23439199 (25 bp)
GCATTCACGATTTGGGTAGCCTCAC
LOC_Os03g42210
OsAffx.25484.1.S1_at--179--10851Chr03:23439186..23439210 (25 bp)
TTGGGTAGCCTCACCATTGTAGAAG
LOC_Os03g42210
OsAffx.25484.1.S1_at--385--2951Chr03:23439208..23439232 (25 bp)
AAGGCGAACCGACCATTGCAGGAGA
LOC_Os03g42210
Target Sequence 
GTGAGGCAATAATCTCCGTAGTTGAGAGCCCTGAGACGCGGACACTTGACGTCGGTCCATCCGCTGTTCCTGCTAGTCAT
ATAGGTGACTCGGGCATGGTTGATGAGGGCAGTCGTGGTGAAGTTGCTCAGCGTCAGGTTAGGAGTGAACACGACCTTCA
ACACCGCCACATTCCTTTAGAGGAGCGAATGGAATGGGATCTCCTTGCCGGTGAGGGCATTCACGATTTGGGTAGCCTCA
CCATTGTAGAAGGCGAACCGACCATTGCAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis