Browse Element(s) Details


OsAffx.25485.1.S1_at

Description tigr:9631.m04064
TID=OsAffx.25485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4224010/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42210OsAffx.25484.1.S1_at11/113+23438913..23439290hypothetical protein
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42260OsAffx.13302.1.S1_at11/113+23467293..23467859expressed protein
LOC_Os03g42270OsAffx.27522.1.S1_x_at5/113+23470646..23476093retrotransposon protein, putative, LINE subclass
LOC_Os03g42280Os.54144.1.S1_at11/113+23477854..23482609B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25485.1.S1_at--812--7631Chr03:23456122..23456146 (25 bp)
GGGACGTTTCCTCTGAGAGCAACAA
LOC_Os03g42240
OsAffx.25485.1.S1_at--647--8991Chr03:23456177..23456201 (25 bp)
TGAAGACTCTGACGGTCCTTCTGAA
LOC_Os03g42240
OsAffx.25485.1.S1_at--509--1391Chr03:23456223..23456247 (25 bp)
AGACGCCGGTTATCTCAATTGCAGA
LOC_Os03g42240
OsAffx.25485.1.S1_at--939--7291Chr03:23456268..23456292 (25 bp)
GTGCGAGCCATCCAATCTGAAATTC
LOC_Os03g42240
OsAffx.25485.1.S1_at--737--5591Chr03:23456286..23456310 (25 bp)
GAAATTCCCATTTGTGTAGCAACCA
LOC_Os03g42240
OsAffx.25485.1.S1_at--132--3151NONE
AATTCCGCGGACTAGAGCTAAGTTC
NONE
OsAffx.25485.1.S1_at--812--3731Chr03:23457507..23457531 (25 bp)
CTAAGTTCGCGATATGCTGCCTCAT
LOC_Os03g42240
OsAffx.25485.1.S1_at--211--4791Chr03:23457522..23457546 (25 bp)
GCTGCCTCATATCTTCCGGATAAAA
LOC_Os03g42240
OsAffx.25485.1.S1_at--488--9711Chr03:23457592..23457616 (25 bp)
TCAATTTGGTGGTGCGTCGTAGATA
LOC_Os03g42240
OsAffx.25485.1.S1_at--907--6691Chr03:23457635..23457659 (25 bp)
GTTCCTTACTGCAGGTTGGCGCAAA
LOC_Os03g42240
OsAffx.25485.1.S1_at--489--7611Chr03:23457688..23457712 (25 bp)
GGGACTTCTGTCTGTTCGAACTGAA
LOC_Os03g42240
Target Sequence 
GGGACGTTTCCTCTGAGAGCAACAAGCATGGAGTTTCACACGAATCACTGGAGAGTGAAGACTCTGACGGTCCTTCTGAA
CCTCCCTACATCTCATCAATGAGACGCCGGTTATCTCAATTGCAGAAGAAGACAGTTGAGGAGAAAGTGCGAGCCATCCA
ATCTGAAATTCCCATTTGTGTAGCAACCATAAGCAAACTTGCTGGCAGTGGTGGCAAGGGGAAATTCCGCGGACTAGAGC
TAAGTTCGCGATATGCTGCCTCATATCTTCCGGATAAAAATCATCAAACTTTGGTGCTCCAATGCAAGGGGATGATCTGG
CAAATCAATTTGGTGGTGCGTCGTAGATATACAAAGGGAAAGAGGTGGTTCCTTACTGCAGGTTGGCGCAAATTTGCTCA
CGACAACCGCCTTCGTGTCGGGGACTTCTGTCTGTTCGAACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis