Browse Element(s) Details


Os.54144.1.S1_at

Description gb:AK102169.1
DB_XREF= gi:32987378
TID=Os.54144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086H19, full insert sequence.
FL= gb:AK102169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4228011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42260OsAffx.13302.1.S1_at11/113+23467293..23467859expressed protein
LOC_Os03g42270OsAffx.27522.1.S1_x_at5/113+23470646..23476093retrotransposon protein, putative, LINE subclass
LOC_Os03g42280Os.54144.1.S1_at11/113+23477854..23482609B3 DNA binding domain containing protein, expressed
LOC_Os03g42284NANA3+23484355..23484896hypothetical protein
LOC_Os03g42290Os.53859.1.S1_at10/113+23487757..23493159B3 DNA binding domain containing protein, expressed
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54144.1.S1_at--6--9791Chr03:23481741..23481765 (25 bp)
TAAGTTCTAGGCCTTACCTGACAGC
LOC_Os03g42280
Os.54144.1.S1_at--386--9871Chr03:23481890..23482224 (25 bp)
TACATCATTATCTTTGGCAGGCAAT
LOC_Os03g42280
Os.54144.1.S1_at--494--931Chr03:23482218..23482242 (25 bp)
AGGCAATTCGCGACAAGGTACCTCC
LOC_Os03g42280
Os.54144.1.S1_at--295--7651Chr03:23482249..23482273 (25 bp)
GGGAGCAAACTTTGACGCTTCTGAT
LOC_Os03g42280
Os.54144.1.S1_at--385--6351Chr03:23482323..23482347 (25 bp)
GATGCGCAGATGATCACCACAGGCT
LOC_Os03g42280
Os.54144.1.S1_at--448--911Chr03:23482343..23482367 (25 bp)
AGGCTGGCGCCATTTTGTCCATGAC
LOC_Os03g42280
Os.54144.1.S1_at--206--6091Chr03:23482418..23482442 (25 bp)
GAGTAAGCTTACCATGACAGTCCAT
LOC_Os03g42280
Os.54144.1.S1_at--885--2131Chr03:23482434..23482458 (25 bp)
ACAGTCCATATCATTCGTCGCAACG
LOC_Os03g42280
Os.54144.1.S1_at--911--1451Chr03:23482459..23482483 (25 bp)
AGAAGAGCTAGTTTCCCTCTGGTGG
LOC_Os03g42280
Os.54144.1.S1_at--310--4291Chr03:23482474..23482498 (25 bp)
CCTCTGGTGGCACTTCCATGAGAAG
LOC_Os03g42280
Os.54144.1.S1_at--1084--2671Chr03:23482496..23482520 (25 bp)
AAGCGTTGGCTTTTATTCTAGTACT
LOC_Os03g42280
Target Sequence 
TAAGTTCTAGGCCTTACCTGACAGCAGACAGAGTTTCTCTGACTGAAGAACAGGTCAGGAAAGTGGAAGAAGTTGTTCAC
TCCATTCAATCTGAAGGTCCCATGTATGTGTCAATAATGAACAAGAGCAATGTTGGTACCGATGGGCTCTACATCATTAT
CTTTGGCAGGCAATTCGCGACAAGGTACCTCCCGGAAGGGGAGCAAACTTTGACGCTTCTGATGACGGGGAAGAGCAATG
CATGGCAGGTCAAGATGCGCCCTCGGAGCGGCGATGCGCAGATGATCACCACAGGCTGGCGCCATTTTGTCCATGACAAC
CATCTGCAAATTGAAGACATCTGCCTCTTCCAGCTGATGAATGATGAGAGTAAGCTTACCATGACAGTCCATATCATTCG
TCGCAACGAGAAGAGCTAGTTTCCCTCTGGTGGCACTTCCATGAGAAGCGTTGGCTTTTATTCTAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis