Browse Element(s) Details


Os.26567.1.S1_at

Description gb:AK072419.1
DB_XREF= gi:32982442
TID=Os.26567.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083A08, full insert sequence.
FL= gb:AK071474.1 gb:AK072419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4232011/11SEC1-family transport protein SLY1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42270OsAffx.27522.1.S1_x_at5/113+23470646..23476093retrotransposon protein, putative, LINE subclass
LOC_Os03g42280Os.54144.1.S1_at11/113+23477854..23482609B3 DNA binding domain containing protein, expressed
LOC_Os03g42284NANA3+23484355..23484896hypothetical protein
LOC_Os03g42290Os.53859.1.S1_at10/113+23487757..23493159B3 DNA binding domain containing protein, expressed
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed
LOC_Os03g42334NANA3+23509659..23510195hypothetical protein
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42360OsAffx.3487.1.S1_at11/113+23520278..23520748hypothetical protein
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005829cellular_componentcytosol
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26567.1.S1_at--505--10471Chr03:23500151..23500175 (25 bp)
TTACTATTTGATCCACGGGCCCCTA
LOC_Os03g42320
Os.26567.1.S1_at--1071--7551Chr03:23500135..23500159 (25 bp)
GGGCCCCTAAATCAGGAACTGCTGG
LOC_Os03g42320
Os.26567.1.S1_at--403--9111Chr03:23500116..23500140 (25 bp)
TGCTGGACAGTTCAGAGGACCCTTC
LOC_Os03g42320
Os.26567.1.S1_at--743--9771Chr03:23500027..23500051 (25 bp)
TAACGCAACGTTCACAGACTACCAA
LOC_Os03g42320
Os.26567.1.S1_at--1043--7671Chr03:23499853..23499877 (25 bp)
GGGTGTTTAAAGCTTCCTAGATCAG
LOC_Os03g42320
Os.26567.1.S1_at--236--6131Chr03:23499799..23499823 (25 bp)
GAGTGGTCCAGACTGCATAGATCAA
LOC_Os03g42320
Os.26567.1.S1_at--541--2431Chr03:23499758..23499782 (25 bp)
AAAAGCTCAGGTTTATGGCCTTGCT
LOC_Os03g42320
Os.26567.1.S1_at--1142--10431Chr03:23499746..23499770 (25 bp)
TTATGGCCTTGCTTTGAATGTCATC
LOC_Os03g42320
Os.26567.1.S1_at--190--731Chr03:23499705..23499729 (25 bp)
ATGATTTTATCTTTCCCGAGTCTGA
LOC_Os03g42320
Os.26567.1.S1_at--326--5331Chr03:23499677..23499701 (25 bp)
GAAGTGTCCATGTATGCTCATTTTC
LOC_Os03g42320
Os.26567.1.S1_at--311--8831Chr03:23499640..23499664 (25 bp)
TGATTTCTTTTGTCTCCTTTTGGTT
LOC_Os03g42320
Target Sequence 
TTACTATTTGATCCACGGGCCCCTAAATCAGGAACTGCTGGACAGTTCAGAGGACCCTTCAGAGAGGCCATTGTTTTCAT
GATTGGTGGTGGAAATTACATTGAATACAGGAGCTTGACAGAGCTAACGCAACGTTCACAGACTACCAAGCAAGTCATAT
ATGGAGCAACTGAAATTCTTAATGGGGTGGAGTTTATTCAGCAACTCTCAGAACTGGGGCAGAAAGCAGGGTTGGGTGGT
GTCAGCAGCAGCCTGCCACCCCAGTAAACAGGCTCCTTCAAGATATTTTGATGTTAATGGGTGTTTAAAGCTTCCTAGAT
CAGTGGTATCTTACCAGACTTTTGATGTTAAAGAGTGGTCCAGACTGCATAGATCAATGGTATCCAATTTCCAAAAAGCT
CAGGTTTATGGCCTTGCTTTGAATGTCATCTATACAAAGTTTTCTTATGATTTTATCTTTCCCGAGTCTGATATGAAGTG
TCCATGTATGCTCATTTTCTTTTATCATCATTGATTTCTTTTGTCTCCTTTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis