Browse Element(s) Details


OsAffx.3487.1.S1_at

Description tigr:9631.m04077
TID=OsAffx.3487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4236011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed
LOC_Os03g42334NANA3+23509659..23510195hypothetical protein
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42360OsAffx.3487.1.S1_at11/113+23520278..23520748hypothetical protein
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3487.1.S1_at--413--1991Chr03:23520628..23520652 (25 bp)
ACTGCCGCCTCACGCTATTGGGAGG
LOC_Os03g42360
OsAffx.3487.1.S1_at--127--1451Chr03:23520600..23520624 (25 bp)
AGAAGCTTGAAGTGGAGCTTGCCAA
LOC_Os03g42360
OsAffx.3487.1.S1_at--580--4411Chr03:23520528..23520552 (25 bp)
GCCACGTCGGCAATGCGCGGCGACA
LOC_Os03g42360
OsAffx.3487.1.S1_at--876--7511Chr03:23520431..23520455 (25 bp)
GTGGAGCAACGAACTGTTAATCGCT
LOC_Os03g42360
OsAffx.3487.1.S1_at--294--5151Chr03:23520426..23520450 (25 bp)
GCAACGAACTGTTAATCGCTCGCCG
LOC_Os03g42360
OsAffx.3487.1.S1_at--4--1251Chr03:23520386..23520410 (25 bp)
AGTTGCACCGCACCCCGCTGAGAAG
LOC_Os03g42360
OsAffx.3487.1.S1_at--213--1331Chr03:23520363..23520387 (25 bp)
AGAGGAGAGGCCTAGCCACCTGGAT
LOC_Os03g42360
OsAffx.3487.1.S1_at--81--1331Chr03:23520358..23520382 (25 bp)
AGAGGCCTAGCCACCTGGATGGTTT
LOC_Os03g42360
OsAffx.3487.1.S1_at--104--4311Chr03:23520353..23520377 (25 bp)
CCTAGCCACCTGGATGGTTTGGCTC
LOC_Os03g42360
OsAffx.3487.1.S1_at--1086--5851Chr03:23520319..23520343 (25 bp)
GAGCCTAACGAGCTAACTCAAGCAT
LOC_Os03g42360
OsAffx.3487.1.S1_at--1121--5891Chr03:23520310..23520334 (25 bp)
GAGCTAACTCAAGCATTCAAACGAA
LOC_Os03g42360
Target Sequence 
ACTGCCGCCTCACGCTATTGGGAGGAGGAGAAGCTTGAAGTGGAGCTTGCCAAGGTGCACGGCCTCATCGCTGCCGAGAT
GGCGGCCGGGTGGAGCGTGCGCCACGTCGGCAATGCGCGGCGACACGTCGGCGGCGAGCTTGCCGCCGCCTTGCTGGAGT
CCCTGACGGAGGAGGTCACGGCGGCGCTGATGATGACGTGGAGCAACGAACTGTTAATCGCTCGCCGCCCGCATCCACCC
CTAGTTGCACCGCACCCCGCTGAGAAGAGGAGAGGCCTAGCCACCTGGATGGTTTGGCTCGCGACTCACGAGCCTAACGA
GCTAACTCAAGCATTCAAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis