Browse Element(s) Details


Os.37674.1.S1_s_at

Description gb:BP184447
DB_XREF= gi:32947875
DB_XREF=BP184447
TID=Os.37674.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.37674 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187122.1 (A.thaliana) ankyrin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4235011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42290Os.53859.1.S1_at10/113+23487757..23493159B3 DNA binding domain containing protein, expressed
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed
LOC_Os03g42334NANA3+23509659..23510195hypothetical protein
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42360OsAffx.3487.1.S1_at11/113+23520278..23520748hypothetical protein
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37674.1.S1_s_at--401--4311Chr03:23516013..23516037 (25 bp)
CCTTTGCTGGCTTTATCTGGGTGAA
LOC_Os03g42350
Os.37674.1.S1_s_at--1117--1031Chr03:23516756..23516780 (25 bp)
AGGTGTCTCAAAGCACTTCGGCTAA
LOC_Os03g42350
Os.37674.1.S1_s_at--109--6811Chr03:23516794..23516818 (25 bp)
GTTTTGCAGCGGATGTTCTGGTTCA
LOC_Os03g42350
Os.37674.1.S1_s_at--720--7891Chr03:23516813..23516837 (25 bp)
GGTTCATGTTTTACCTTTCCACAAG
LOC_Os03g42350
Os.37674.1.S1_s_at--489--10271Chr03:23516828..23516852 (25 bp)
TTTCCACAAGGCTCTTTTGGCATTG
LOC_Os03g42350
Os.37674.1.S1_s_at--727--10231Chr03:23516843..23516867 (25 bp)
TTTGGCATTGAATCCCTGAACTGGT
LOC_Os03g42350
Os.37674.1.S1_s_at--847--8951Chr03:23516859..23516883 (25 bp)
TGAACTGGTTCCCTTTCGTAAGTTG
LOC_Os03g42350
Os.37674.1.S1_s_at--902--6091Chr03:23516890..23516914 (25 bp)
GAGTCGGTGACTATCGCAGAAGTTT
LOC_Os03g42350
Os.37674.1.S1_s_at--905--6831Chr03:23516911..23516935 (25 bp)
GTTTCATTGTGCTAACTCGAACTGA
LOC_Os03g42350
Os.37674.1.S1_s_at--920--471Chr03:23516945..23516969 (25 bp)
ATCTGAGAGTACTTTTTGCTGCATC
LOC_Os03g42350
Os.37674.1.S1_s_at--733--8671Chr03:23516970..23516994 (25 bp)
TGTGTGATGCCCCATTATAATGTCT
LOC_Os03g42350
Target Sequence 
CCTTTGCTGGCTTTATCTGGGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGGC
CAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCGTGTGAAGCACTTTTTGATGGA
TTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAATGCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCAC
TTCGGCTAACTGAACTGTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGGCATT
GAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCAGAAGTTTCATTGTGCTAACTCGAA
CTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCATCTGTGTGATGCCCCATTATAATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37674.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis