Browse Element(s) Details

Os.7388.2.S1_at

Description

gb:AK064383.1
DB_XREF= gi:32974401
TID=Os.7388.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.6 (P0039H02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E03, full insert sequence.
FL= gb:AK064383.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g07030	11/11	expressed protein
LOC_Os03g42380	9/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g06980	Os.21399.1.S1_a_at	11/11	7	+	3434310..3443018	histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990	Os.28059.5.A1_x_at	11/11	7	+	3443285..3444565	hypothetical protein
LOC_Os07g07000	Os.28059.1.S1_a_at	11/11	7	+	3444643..3448633	Syntaxin 132, putative, expressed
LOC_Os07g07000	OsAffx.31589.1.S1_s_at	1/11	7	+	3444643..3448633	Syntaxin 132, putative, expressed
LOC_Os07g07010	OsAffx.28317.1.S1_at	11/11	7	+	3452188..3455354	ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020	Os.18373.1.S1_at	11/11	7	+	3458131..3461054	SOH1 family protein, expressed
LOC_Os07g07030	Os.7388.1.S1_s_at	11/11	7	+	3463488..3465508	expressed protein
LOC_Os07g07030	Os.7388.2.S1_at	11/11	7	+	3463488..3465508	expressed protein
LOC_Os07g07030	Os.7388.2.S1_x_at	11/11	7	+	3463488..3465508	expressed protein
LOC_Os07g07040	OsAffx.22469.1.S1_x_at	11/11	7	+	3467731..3469935	expressed protein
LOC_Os07g07040	Os.12429.1.S1_at	11/11	7	+	3467731..3469935	expressed protein
LOC_Os07g07050	Os.44431.1.S1_at	11/11	7	+	3470134..3475221	Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050	Os.44431.2.S1_x_at	11/11	7	+	3470134..3475221	Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060	Os.31875.2.S1_at	10/11	7	+	3481393..3484193	Anticodon binding domain containing protein, expressed
LOC_Os07g07060	Os.31875.1.S1_at	8/11	7	+	3481393..3484193	Anticodon binding domain containing protein, expressed
LOC_Os07g07070	Os.39913.1.A1_at	11/11	7	+	3484259..3487687	C2 domain containing protein, expressed
LOC_Os07g07080	Os.44430.1.S1_at	11/11	7	+	3490401..3497610	ankyrin repeat family protein, putative, expressed
LOC_Os07g07080	Os.44430.1.S2_at	6/11	7	+	3490401..3497610	ankyrin repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7388.2.S1_at--424--27	1	Chr07:3463963..3463987 (25 bp)	ATATGTTTTTATTTATACTCGCAAT	LOC_Os07g07030
Os.7388.2.S1_at--486--681	1	Chr07:3463959..3463983 (25 bp)	GTTTTTATTTATACTCGCAATTTGT	LOC_Os07g07030
Os.7388.2.S1_at--171--1021	2	Chr07:3463954..3463978 (25 bp)	TATTTATACTCGCAATTTGTACCCT	LOC_Os07g07030
Os.7388.2.S1_at--609--1081	2	Chr07:3463938..3463962 (25 bp)	TTGTACCCTTCCTCATACTCACTTT	LOC_Os07g07030
Os.7388.2.S1_at--781--873	2	Chr07:3463937..3463961 (25 bp)	TGTACCCTTCCTCATACTCACTTTA	LOC_Os07g07030
Os.7388.2.S1_at--606--995	2	Chr07:3463935..3463959 (25 bp)	TACCCTTCCTCATACTCACTTTATA	LOC_Os07g07030
Os.7388.2.S1_at--824--181	2	Chr07:3463934..3463958 (25 bp)	ACCCTTCCTCATACTCACTTTATAT	LOC_Os07g07030
Os.7388.2.S1_at--690--431	2	Chr07:3463932..3463956 (25 bp)	CCTTCCTCATACTCACTTTATATTC	LOC_Os07g07030
Os.7388.2.S1_at--465--1067	2	Chr07:3463930..3463954 (25 bp)	TTCCTCATACTCACTTTATATTCAA	LOC_Os07g07030
Os.7388.2.S1_at--70--961	2	Chr07:3463926..3463950 (25 bp)	TCATACTCACTTTATATTCAACTAA	LOC_Os07g07030
Os.7388.2.S1_at--1158--249	2	Chr07:3463907..3463931 (25 bp)	AACTAAATTAGATATGGATTCCTTC	LOC_Os07g07030

Target Sequence

ATATGTTTTTATTTATACTCGCAATTTGTACCCTTCCTCATACTCACTTTATATTCAACTAAATTAGATATGGATTCCTT
C

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis