Browse Element(s) Details


Os.44430.1.S1_at

Description gb:AK120764.1
DB_XREF= gi:37990387
TID=Os.44430.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative UVB-resistance protein (P0039H02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007H22, full insert sequence.
FL= gb:AK120764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0708011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44430.1.S1_at--72--10331Chr07:3492987..3493011 (25 bp)
TTTCACAGTGGCAGCTCCATCAGTT
LOC_Os07g07080
Os.44430.1.S1_at--607--7111Chr07:3492906..3492930 (25 bp)
GTCAGAGCCATGGAGTCATCGTCGC
LOC_Os07g07080
Os.44430.1.S1_at--445--1571Chr07:3492867..3492891 (25 bp)
AGCTACTTATCCTGCTGTCATTGAT
LOC_Os07g07080
Os.44430.1.S1_at--63--6531Chr07:3492814..3492838 (25 bp)
GATTTCTTAGGCTCAGGGACAGTCA
LOC_Os07g07080
Os.44430.1.S1_at--696--7111Chr07:3492793..3492817 (25 bp)
GTCAGAAGTCTGCATCGAAGTCATA
LOC_Os07g07080
Os.44430.1.S1_at--388--4711Chr07:3492725..3492749 (25 bp)
GCTGGACAAGCTGCCTCTAAACAGA
LOC_Os07g07080
Os.44430.1.S1_at--710--3731Chr07:3492709..3492733 (25 bp)
CTAAACAGATCAGGGCACTTCGCAA
LOC_Os07g07080
Os.44430.1.S1_at--626--6331Chr07:3492666..3492690 (25 bp)
GATGCTCGAGGCTAAACAACTGGAT
LOC_Os07g07080
Os.44430.1.S1_at--622--2351Chr07:3492612..3492636 (25 bp)
AAAGCTTGAGTCAAGGGCTGCCCTT
LOC_Os07g07080
Os.44430.1.S1_at--457--4551Chr07:3492593..3492617 (25 bp)
GCCCTTGAGGGTGAACTTGCAGAAC
LOC_Os07g07080
Os.44430.1.S1_at--682--1991Chr07:3492570..3492594 (25 bp)
ACTCGGCATTCCCACAGATTTAAGA
LOC_Os07g07080
Target Sequence 
TTTCACAGTGGCAGCTCCATCAGTTATGAATGCTTCTCCTGAAACTCTTGCAAACTTAGAGAGATTGCTGGATGAAAAAT
CGTCAGAGCCATGGAGTCATCGTCGCCTTCCCACAGTGACAGCTACTTATCCTGCTGTCATTGATAGTGATGAAGAGGGA
GATGAAGCAGGAGGATTTCTTAGGCTCAGGGACAGTCAGAAGTCTGCATCGAAGTCATATGGAATATCAAGTTATGGGAA
CTTCCTTGAGAAAGATAGCAATGCTGGACAAGCTGCCTCTAAACAGATCAGGGCACTTCGCAAGAAACTGCAGCAGATTG
AGATGCTCGAGGCTAAACAACTGGATGGTCATCAGCTTGATAATCAGCAGCTAGCAAAGCTTGAGTCAAGGGCTGCCCTT
GAGGGTGAACTTGCAGAACTCGGCATTCCCACAGATTTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis