Browse Element(s) Details


Os.7388.2.S1_x_at

Description gb:AK064383.1
DB_XREF= gi:32974401
TID=Os.7388.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.6 (P0039H02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E03, full insert sequence.
FL= gb:AK064383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0703011/11expressed protein
LOC_Os03g423809/11expressed protein
LOC_Os02g278701/11expressed protein
LOC_Os08g020001/11expressed protein
LOC_Os01g458801/11expressed protein
LOC_Os10g249401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7388.2.S1_x_at--813--8992Chr07:3464444..3464468 (25 bp)
TGAAGTTCCAATGAGCTGCGTAATT
LOC_Os07g07030
Os.7388.2.S1_x_at--567--7074Chr07:3464388..3464412 (25 bp)
GTAATGCAACTCTTACACCGGAGCA
LOC_Os07g07030
Os.7388.2.S1_x_at--808--8832Chr07:3464243..3464267 (25 bp)
TGATATGAATGCTCGCCAGCGATCA
LOC_Os07g07030
Os.7388.2.S1_x_at--933--8532Chr07:3464198..3464222 (25 bp)
TGGAGAACGGTCTGCTCATCTGGCA
LOC_Os07g07030
Os.7388.2.S1_x_at--1144--1951Chr07:3464162..3464186 (25 bp)
ACTGTATGCAGCTAGGCGTGACAAA
LOC_Os07g07030
Os.7388.2.S1_x_at--132--7371Chr07:3464145..3464169 (25 bp)
GTGACAAACCATGCACTCAATCGAT
LOC_Os07g07030
Os.7388.2.S1_x_at--870--1132Chr07:3464112..3464136 (25 bp)
AGTGCCCTGAGGATTGTAGCTCGTC
LOC_Os07g07030
Os.7388.2.S1_x_at--420--5872Chr07:3464033..3464057 (25 bp)
GAGCCTGCAAACTGAACTTGCTGCA
LOC_Os07g07030
Os.7388.2.S1_x_at--1114--5034Chr10:12506594..12506613 (20 bp)
GCAGATCATCTTGCACGATCGTCTA
LOC_Os10g24940
Os.7388.2.S1_x_at--172--10212Chr07:3463954..3463978 (25 bp)
TATTTATACTCGCAATTTGTACCCT
LOC_Os07g07030
Os.7388.2.S1_x_at--689--4312Chr07:3463932..3463956 (25 bp)
CCTTCCTCATACTCACTTTATATTC
LOC_Os07g07030
Target Sequence 
TGAAGTTCCAATGAGCTGCGTAATTCAAACAACCCAAAACAGAGACGTCAAGTTGCGTAATGCAACTCTTACACCGGAGC
AGAAGCAAGCTAAGGTCGATCGACAGAGAACAAGACGTCAAGCACTAACCAATGAACAGAGACTAGAGATGAATGATCGC
CGTAGGGTTGCAAGGCAAACTCTGCCGGATGTGGAAATACATGATATGAATGCTCGCCAGCGATCAAGACGACAAAGTGT
TACTCCTGGAGAACGGTCTGCTCATCTGGCACGACGTAATGAACTGTATGCAGCTAGGCGTGACAAACCATGCACTCAAT
CGATTGCATTGGAGTGCCCTGAGGATTGTAGCTCGTCGTTGCTAAATCCAACGCCTTCCTTTGAAACAACCGGTGATGTG
CCAGCTACATCGAGCCTGCAAACTGAACTTGCTGCAGATCATCTTGCACGATCGTCTAACTTTGATGATGGTATCATCTA
TATATGTTTTTATTTATACTCGCAATTTGTACCCTTCCTCATACTCACTTTATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7388.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis