Browse Element(s) Details


Os.21399.1.S1_a_at

Description gb:AK111557.1
DB_XREF= gi:37988220
TID=Os.21399.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone deacetylase (P0039H02.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057F02, full insert sequence.
FL= gb:AK111557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0698011/11histone deacetylase HDA110 isoform 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g06960Os.44434.1.S1_at9/117+3424580..3426767pentatricopeptide, putative
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016575biological_processhistone deacetylation
GO:0045604biological_processregulation of epidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004406molecular_functionH3/H4 histone acetyltransferase activity
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21399.1.S1_a_at--656--4831Chr07:3436485..3436504 (20 bp)
GCTACTGAAGTTGTTAAGGTCCTAC
LOC_Os07g06980
Os.21399.1.S1_a_at--519--7671Chr07:3435956..3435980 (25 bp)
GGGATAGTCCTGTTTATGATACAGA
LOC_Os07g06980
Os.21399.1.S1_a_at--866--6471Chr07:3435939..3435963 (25 bp)
GATACAGATGCAACTGAACCATCAG
LOC_Os07g06980
Os.21399.1.S1_a_at--659--3851Chr07:3435926..3435950 (25 bp)
CTGAACCATCAGAGGAGGGCATACA
LOC_Os07g06980
Os.21399.1.S1_a_at--590--6131Chr07:3435912..3435936 (25 bp)
GAGGGCATACAGACTGTCTTACAAG
LOC_Os07g06980
Os.21399.1.S1_a_at--171--2231Chr07:3435892..3435916 (25 bp)
ACAAGTCCTGAGTATCCAGCAGCAA
LOC_Os07g06980
Os.21399.1.S1_a_at--881--9211Chr07:3435878..3435902 (25 bp)
TCCAGCAGCAATTTTGGCCAGTTTT
LOC_Os07g06980
Os.21399.1.S1_a_at--25--4431Chr07:3435862..3435886 (25 bp)
GCCAGTTTTAGTTCCATCCTTTGCA
LOC_Os07g06980
Os.21399.1.S1_a_at--540--571Chr07:3435847..3435871 (25 bp)
ATCCTTTGCATCAGTTCTGGCACTG
LOC_Os07g06980
Os.21399.1.S1_a_at--496--1231Chr07:3435835..3435859 (25 bp)
AGTTCTGGCACTGCAGCGGTCGGTT
LOC_Os07g06980
Os.21399.1.S1_a_at--544--3391Chr07:3435822..3435846 (25 bp)
CAGCGGTCGGTTTTTTCCAGATATA
LOC_Os07g06980
Target Sequence 
GCTACTGAAGTTGTTAAGGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAGAGGAGGGCAT
ACAGACTGTCTTACAAGTCCTGAGTATCCAGCAGCAATTTTGGCCAGTTTTAGTTCCATCCTTTGCATCAGTTCTGGCAC
TGCAGCGGTCGGTTTTTTCCAGATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21399.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis