Browse Element(s) Details


Os.6600.1.S1_at

Description gb:NM_186432.1
DB_XREF= gi:34899949
GEN=P0428D12.16
TID=Os.6600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6600 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ubiquitin carboxyl-terminal hydrolase (P0428D12.16), mRNA.
PROD=putative ubiquitin carboxyl-terminal hydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0695011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein
LOC_Os07g06940Os.17841.1.S1_at11/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06940Os.17841.2.S1_x_at9/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g06960Os.44434.1.S1_at9/117+3424580..3426767pentatricopeptide, putative
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6600.1.S1_at--963--10751Chr07:3419499..3419523 (25 bp)
TTGAGCTGTCTCATCCTAATGCTGA
LOC_Os07g06950
Os.6600.1.S1_at--874--5691Chr07:3419529..3419553 (25 bp)
GACTACTTGAGGTTTTCTATCACAA
LOC_Os07g06950
Os.6600.1.S1_at--253--411Chr07:3419687..3419711 (25 bp)
ATCAGTACTGGACCCTGCGTGCAGA
LOC_Os07g06950
Os.6600.1.S1_at--453--431Chr07:3419843..3419867 (25 bp)
ATCTTGGTCCTTTTGATCGCTTGAT
LOC_Os07g06950
Os.6600.1.S1_at--527--6171Chr07:3420828..3420852 (25 bp)
GAGGATGAAACCCTTTCTTCTATTA
LOC_Os07g06950
Os.6600.1.S1_at--260--211Chr07:3421906..3421930 (25 bp)
ATTTGCCTACATATCACTTGGTCGC
LOC_Os07g06950
Os.6600.1.S1_at--310--251Chr07:3421916..3421940 (25 bp)
ATATCACTTGGTCGCCCAGATTATT
LOC_Os07g06950
Os.6600.1.S1_at--182--6171Chr07:3421943..3421967 (25 bp)
GAGGATTCAGACACTGTAGCTTCAA
LOC_Os07g06950
Os.6600.1.S1_at--906--5951Chr07:3422081..3422105 (25 bp)
GAGCAATATCTTGGACTGGAGCATC
LOC_Os07g06950
Os.6600.1.S1_at--520--5631Chr07:3422108..3422132 (25 bp)
GACACGGCTCCTAGAAAGACACACA
LOC_Os07g06950
Os.6600.1.S1_at--728--2191Chr07:3422130..3422296 (25 bp)
ACAACGCTAATCAGAACCGCCATTC
LOC_Os07g06950
Target Sequence 
TTGAGCTGTCTCATCCTAATGCTGAGCTTAGACTACTTGAGGTTTTCTATCACAAGATATACAAGATTTTTGCACCGAAT
GAAAAGATAGAAAACATCAATGATCAGTACTGGACCCTGCGTGCAGAGGAGGTTCCGGAGGAAGAGAAAAATCTTGGTCC
TTTTGATCGCTTGATTCATGTATACCATTTTACCAAAGACACTCAAAATCAGACGCAAGTTCAGAACTTTGGAGAACCTT
TCTTTATGGTTATTCGTGAGGATGAAACCCTTTCTTCTATTAAAGAACGGATACAGAAAAAACTAAAAGTTCCAGATGAG
GATTTCTCAAAGTGGAAATTTGCCTACATATCACTTGGTCGCCCAGATTATTTTGAGGATTCAGACACTGTAGCTTCAAG
ATTTCAGCGAAACATGTATGGAGCTTGGGAGCAATATCTTGGACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACA
ACGCTAATCAGAACCGCCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis