Browse Element(s) Details


Os.17841.2.S1_x_at

Description gb:BI813726
DB_XREF= gi:16579631
DB_XREF=N002F10
CLONE=N002F10
TID=Os.17841.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.17841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0428D12.13 (P0428D12.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g069409/11Valyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein
LOC_Os07g06910OsAffx.21754.1.S1_x_at1/117+3376409..3377539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06920NANA7+3378934..3382385retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein
LOC_Os07g06940Os.17841.1.S1_at11/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06940Os.17841.2.S1_x_at9/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17841.2.S1_x_at--458--171Chr07:3397695..3397718 (24 bp)
ATTTTAGCGAGTTGCCGCCAGGTGA
LOC_Os07g06940
Os.17841.2.S1_x_at--229--6331Chr07:3397797..3397821 (25 bp)
GATGCAAATCAGTCGGTCCACATTG
LOC_Os07g06940
Os.17841.2.S1_x_at--508--451Chr07:3397846..3397870 (25 bp)
ATCTACCCCTGGCTGACATGGTGGA
LOC_Os07g06940
Os.17841.2.S1_x_at--739--8451NONE
TGGCCCGTCTCAATTCAGGAAGTTT
NONE
Os.17841.2.S1_x_at--231--5371Chr07:3398114..3398138 (25 bp)
GAAGAGAAGATCTCCCTCACCAAGA
LOC_Os07g06940
Os.17841.2.S1_x_at--955--3971Chr07:3398196..3398220 (25 bp)
CGGTGTCAACCTGCCATCTAAATAA
LOC_Os07g06940
Os.17841.2.S1_x_at--964--5771Chr07:3398244..3398268 (25 bp)
GACGAGAGATGCCACTTCCGGATAT
LOC_Os07g06940
Os.17841.2.S1_x_at--755--8891Chr07:3398289..3398313 (25 bp)
TGAGTGCCATTCCATTTTCGCGTGT
LOC_Os07g06940
Os.17841.2.S1_x_at--1145--10291NONE
TTTCGCGTGTGCCAGGACATTGCAA
NONE
Os.17841.2.S1_x_at--882--7771Chr07:3398330..3398354 (25 bp)
GGTGCACGCATCTTACCGATAAGTT
LOC_Os07g06940
Os.17841.2.S1_x_at--237--6771Chr07:3398382..3398404 (23 bp)
GTTACTAGGTATGCCTGTACGCCTG
LOC_Os07g06940
Target Sequence 
ATTTTAGCGAGTTGCCGCCAGGTGATGCAAATCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATCTACCC
CTGGCTGACATGGTGGATGTTTCTGAGGAANTTAANGCGGCTGTNCAAAGCGCCTCTCTAAGATNCAGTCGGAATATGAT
TCTTNGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGC
ATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACA
GTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGG
ATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCCAGGACATTGCAACTGGTGCACGCATCTT
ACCGATAAGTTCTACTATATACACTCATTTATACGTTACTAGGTATGCCTGTACGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17841.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis