Browse Element(s) Details


Os.47952.1.A1_at

Description gb:AK067700.1
DB_XREF= gi:32977718
TID=Os.47952.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118L17, full insert sequence.
FL= gb:AK067700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g068903/11FAD linked oxidases, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein
LOC_Os07g06910OsAffx.21754.1.S1_x_at1/117+3376409..3377539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06920NANA7+3378934..3382385retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein
LOC_Os07g06940Os.17841.1.S1_at11/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06940Os.17841.2.S1_x_at9/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47952.1.A1_at--10--2351Chr07:3361878..3361902 (25 bp)
AAAGAGCTGGGCATCGAGTCGCTAA
LOC_Os07g06890
Os.47952.1.A1_at--428--3091Chr07:3361840..3361864 (25 bp)
AATAAAGGCTGCGTTGGATCCCAAC
LOC_Os07g06890
Os.47952.1.A1_at--1077--8151Chr07:3361799..3361823 (25 bp)
GGAAACTGATTCCACCTCAAGTCTG
LOC_Os07g06890
Os.47952.1.A1_at--459--8351Chr07:3361731..3361755 (25 bp)
GGCTGGTTCAGTGACTTCCACTCAA
NONE
Os.47952.1.A1_at--1107--1431Chr07:3361696..3361720 (25 bp)
AGCAAGGCAAGTCGTGGCGTTACCA
NONE
Os.47952.1.A1_at--69--7551Chr07:3361683..3361707 (25 bp)
GTGGCGTTACCACTGAATGCGCATT
NONE
Os.47952.1.A1_at--252--2531Chr07:3361657..3361681 (25 bp)
AACGGCGAAGACTCAGGACTGTTAT
NONE
Os.47952.1.A1_at--950--1811Chr07:3361603..3361627 (25 bp)
ACGCTAGAACTGTTACTCTGAGCCA
NONE
Os.47952.1.A1_at--327--2011Chr07:3361589..3361613 (25 bp)
ACTCTGAGCCATTCATATACCGGGA
NONE
Os.47952.1.A1_at--510--5131Chr07:3361556..3361580 (25 bp)
GCAAAACTTCGTTCCAGTTGCTATA
NONE
Os.47952.1.A1_at--175--1271Chr07:3361429..3361453 (25 bp)
AGATTTGCCACGTTAGAGCTGATAA
NONE
Target Sequence 
AAAGAGCTGGGCATCGAGTCGCTAAGGACGATGAAAAGAATAAAGGCTGCGTTGGATCCCAACAATATCATGAATCCAGG
GAAACTGATTCCACCTCAAGTCTGCATTTGATGATACAGACGTTCCCAAGTTNCTGNCTNNCTCACTGGCTGGTTCAGTG
ACTTCCACTCAACTCCCAGTCCAGCAAGGCAAGTCGTGGCGTTACCACTGAATGCGCATTGAACGGCGAAGACTCAGGAC
TGTTATACACGAGTTGAATGCNAAAATNAACGTGAACGCTAGAACTGTTACTCTGAGCCATTCATATACCGGGAATAAAT
GAGCAAAACTTCGTTCCAGTTGCTATATGAAATATGAGTGATTCTATGATAGGCTTGGTGATAGAAAATTCTAAGCTATT
TCAAATATTTGGAGCTAAACAACGTAGTAGTAGATGTTTGGTGAATTGAAGATTTGCCACGTTAGAGCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47952.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis