Browse Element(s) Details


Os.18428.1.S1_at

Description gb:AK106266.1
DB_XREF= gi:32991475
TID=Os.18428.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cell death associated protein (P0428D12.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G01, full insert sequence.
FL= gb:AK106266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0688011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein
LOC_Os07g06910OsAffx.21754.1.S1_x_at1/117+3376409..3377539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06920NANA7+3378934..3382385retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18428.1.S1_at--372--9711Chr07:3358688..3358712 (25 bp)
TCAAGCTCTTCGTTGACACCGACGG
LOC_Os07g06880
Os.18428.1.S1_at--398--3791Chr07:3358614..3358638 (25 bp)
CTCGTGTGTGCCTTGTCGGCAATAA
LOC_Os07g06880
Os.18428.1.S1_at--1027--7671Chr07:3358526..3358550 (25 bp)
GGGTATATGATCCATTGCCAGCCAT
LOC_Os07g06880
Os.18428.1.S1_at--228--91Chr07:3358513..3358537 (25 bp)
ATTGCCAGCCATTTGCGTATATTGC
LOC_Os07g06880
Os.18428.1.S1_at--258--1551Chr07:3358488..3358512 (25 bp)
AGCTTGATTTGCGAGAGGCTCCTCT
LOC_Os07g06880
Os.18428.1.S1_at--436--911Chr07:3358473..3358497 (25 bp)
AGGCTCCTCTAACTGATGGGTGTCC
LOC_Os07g06880
Os.18428.1.S1_at--931--7731Chr07:3358455..3358479 (25 bp)
GGTGTCCCTGACATGAGTCTACGAG
LOC_Os07g06880
Os.18428.1.S1_at--53--6031Chr07:3358433..3358457 (25 bp)
GAGAGTGACTCCTATCTGTTAAAGA
LOC_Os07g06880
Os.18428.1.S1_at--651--9831Chr07:3358414..3358438 (25 bp)
TAAAGATTCATGTCCCTCTAAAAAT
LOC_Os07g06880
Os.18428.1.S1_at--22--10611Chr07:3358378..3358402 (25 bp)
TTCTGCTTTATTTGGTAACGCTATC
LOC_Os07g06880
Os.18428.1.S1_at--259--7971Chr07:3358347..3358371 (25 bp)
GGATCTATGTCCCTCTGAAAGTTAG
LOC_Os07g06880
Target Sequence 
TCAAGCTCTTCGTTGACACCGACGGCGGCGGCGGCGCCCNGCCTCGACGGCTGATCAGCCGCCGCGTGCTCCTCTCTCGT
GTGTGCCTTGTCGGCAATAATAAATCGATTCGGATTTCAAAATGCTAGAAAATTCATTTATCAAATGTTCAAAGTTCAGA
AGGGGGTATATGATCCATTGCCAGCCATTTGCGTATATTGCAGCTTGATTTGCGAGAGGCTCCTCTAACTGATGGGTGTC
CCTGACATGAGTCTACGAGAGTGACTCCTATCTGTTAAAGATTCATGTCCCTCTAAAAATTAGAGAACTTATTCTGCTTT
ATTTGGTAACGCTATCTATTAAGGATCTATGTCCCTCTGAAAGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis